Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02905 and ECD_02906 are separated by 0 nucleotides ECD_02906 and ECD_02907 are separated by 204 nucleotides ECD_02907 and ECD_02908 overlap by 1 nucleotides ECD_02908 and ECD_02909 overlap by 113 nucleotides ECD_02909 and ECD_02910 are separated by 5 nucleotides
ECD_02905: ECD_02905 - DUF1249 protein YqiB, at 3,044,295 to 3,044,717
_02905
ECD_02906: ECD_02906 - ADP-ribose pyrophosphatase, at 3,044,718 to 3,045,347
_02906
ECD_02907: ECD_02907 - transport channel, at 3,045,552 to 3,047,033
_02907
ECD_02908: ECD_02908 - hypothetical protein, at 3,047,033 to 3,047,293
_02908
ECD_02909: ECD_02909 - DUF1190 family protein, at 3,047,181 to 3,047,852
_02909
ECD_02910: ECD_02910 - ATP-Grasp family ATPase, at 3,047,858 to 3,049,018
_02910
Position (kb)
3045
3046
3047
3048 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.606 kb on - strand, within ECD_02905 at 3044.610 kb on + strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.611 kb on - strand, within ECD_02905 at 3044.707 kb on + strand at 3044.719 kb on + strand at 3044.719 kb on + strand at 3044.720 kb on - strand at 3044.808 kb on + strand, within ECD_02906 at 3044.809 kb on - strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.818 kb on + strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.819 kb on - strand, within ECD_02906 at 3044.853 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.919 kb on - strand, within ECD_02906 at 3044.964 kb on + strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3044.965 kb on - strand, within ECD_02906 at 3045.100 kb on + strand, within ECD_02906 at 3045.229 kb on - strand, within ECD_02906 at 3045.229 kb on - strand, within ECD_02906 at 3045.246 kb on - strand, within ECD_02906 at 3045.320 kb on + strand at 3045.342 kb on - strand at 3045.351 kb on + strand at 3045.351 kb on + strand at 3045.365 kb on + strand at 3045.365 kb on + strand at 3045.369 kb on - strand at 3045.369 kb on - strand at 3045.376 kb on + strand at 3045.425 kb on + strand at 3045.448 kb on + strand at 3045.501 kb on + strand at 3045.502 kb on - strand at 3045.653 kb on + strand at 3045.672 kb on - strand at 3045.710 kb on + strand, within ECD_02907 at 3045.748 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.765 kb on + strand, within ECD_02907 at 3045.829 kb on + strand, within ECD_02907 at 3046.027 kb on + strand, within ECD_02907 at 3046.027 kb on + strand, within ECD_02907 at 3046.098 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.133 kb on + strand, within ECD_02907 at 3046.182 kb on + strand, within ECD_02907 at 3046.182 kb on + strand, within ECD_02907 at 3046.288 kb on + strand, within ECD_02907 at 3046.366 kb on + strand, within ECD_02907 at 3046.399 kb on - strand, within ECD_02907 at 3046.628 kb on + strand, within ECD_02907 at 3046.628 kb on + strand, within ECD_02907 at 3046.647 kb on + strand, within ECD_02907 at 3046.718 kb on + strand, within ECD_02907 at 3046.934 kb on + strand at 3046.934 kb on + strand at 3046.934 kb on + strand at 3047.068 kb on - strand, within ECD_02908 at 3047.068 kb on - strand, within ECD_02908 at 3047.090 kb on + strand, within ECD_02908 at 3047.090 kb on + strand, within ECD_02908 at 3047.091 kb on - strand, within ECD_02908 at 3047.141 kb on + strand, within ECD_02908 at 3047.153 kb on + strand, within ECD_02908 at 3047.154 kb on - strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.158 kb on - strand, within ECD_02908 at 3047.158 kb on - strand, within ECD_02908 at 3047.372 kb on + strand, within ECD_02909 at 3047.373 kb on - strand, within ECD_02909 at 3047.424 kb on + strand, within ECD_02909 at 3047.658 kb on + strand, within ECD_02909 at 3047.660 kb on + strand, within ECD_02909 at 3047.682 kb on + strand, within ECD_02909 at 3047.804 kb on + strand at 3047.804 kb on + strand at 3047.805 kb on - strand at 3047.872 kb on + strand at 3047.967 kb on - strand at 3047.969 kb on + strand at 3047.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,044,606 - ECD_02905 0.74 -0.7 3,044,606 - ECD_02905 0.74 +3.9 3,044,606 - ECD_02905 0.74 -1.4 3,044,606 - ECD_02905 0.74 -0.8 3,044,610 + ECD_02905 0.74 -1.6 3,044,611 - ECD_02905 0.75 -0.0 3,044,611 - ECD_02905 0.75 +4.0 3,044,611 - ECD_02905 0.75 +3.0 3,044,611 - ECD_02905 0.75 +4.4 3,044,707 + +3.2 3,044,719 + -1.0 3,044,719 + +0.8 3,044,720 - +2.4 3,044,808 + ECD_02906 0.14 -0.9 3,044,809 - ECD_02906 0.14 -1.6 3,044,818 + ECD_02906 0.16 -0.7 3,044,818 + ECD_02906 0.16 -1.0 3,044,818 + ECD_02906 0.16 -1.0 3,044,818 + ECD_02906 0.16 -0.7 3,044,819 - ECD_02906 0.16 -0.9 3,044,819 - ECD_02906 0.16 -0.5 3,044,819 - ECD_02906 0.16 +0.2 3,044,819 - ECD_02906 0.16 +3.7 3,044,853 - ECD_02906 0.21 -0.3 3,044,919 - ECD_02906 0.32 +2.8 3,044,919 - ECD_02906 0.32 -0.0 3,044,919 - ECD_02906 0.32 +3.7 3,044,919 - ECD_02906 0.32 +2.7 3,044,919 - ECD_02906 0.32 +2.6 3,044,964 + ECD_02906 0.39 +0.2 3,044,965 - ECD_02906 0.39 +2.8 3,044,965 - ECD_02906 0.39 +0.6 3,044,965 - ECD_02906 0.39 -0.8 3,044,965 - ECD_02906 0.39 -1.3 3,045,100 + ECD_02906 0.61 -0.0 3,045,229 - ECD_02906 0.81 -0.7 3,045,229 - ECD_02906 0.81 -1.0 3,045,246 - ECD_02906 0.84 -0.8 3,045,320 + +0.2 3,045,342 - -0.3 3,045,351 + -0.8 3,045,351 + -0.8 3,045,365 + -0.4 3,045,365 + -0.1 3,045,369 - -1.4 3,045,369 - +2.4 3,045,376 + -2.1 3,045,425 + +1.3 3,045,448 + -2.0 3,045,501 + +0.4 3,045,502 - +3.6 3,045,653 + +3.1 3,045,672 - +2.1 3,045,710 + ECD_02907 0.11 +2.7 3,045,748 + ECD_02907 0.13 +3.7 3,045,765 + ECD_02907 0.14 +4.8 3,045,765 + ECD_02907 0.14 +2.6 3,045,765 + ECD_02907 0.14 +3.1 3,045,829 + ECD_02907 0.19 +3.3 3,046,027 + ECD_02907 0.32 +4.5 3,046,027 + ECD_02907 0.32 +3.3 3,046,098 + ECD_02907 0.37 +4.0 3,046,133 + ECD_02907 0.39 +3.4 3,046,133 + ECD_02907 0.39 +1.9 3,046,133 + ECD_02907 0.39 +3.2 3,046,182 + ECD_02907 0.43 +2.2 3,046,182 + ECD_02907 0.43 +3.8 3,046,288 + ECD_02907 0.50 +4.1 3,046,366 + ECD_02907 0.55 +3.3 3,046,399 - ECD_02907 0.57 +3.1 3,046,628 + ECD_02907 0.73 +3.5 3,046,628 + ECD_02907 0.73 +3.2 3,046,647 + ECD_02907 0.74 +3.6 3,046,718 + ECD_02907 0.79 +2.9 3,046,934 + -2.3 3,046,934 + -0.9 3,046,934 + -0.3 3,047,068 - ECD_02908 0.13 +1.1 3,047,068 - ECD_02908 0.13 +0.1 3,047,090 + ECD_02908 0.22 -1.1 3,047,090 + ECD_02908 0.22 -1.2 3,047,091 - ECD_02908 0.22 -2.3 3,047,141 + ECD_02908 0.41 -1.3 3,047,153 + ECD_02908 0.46 -1.7 3,047,154 - ECD_02908 0.46 +0.5 3,047,157 + ECD_02908 0.48 -1.8 3,047,157 + ECD_02908 0.48 -1.3 3,047,157 + ECD_02908 0.48 -2.2 3,047,158 - ECD_02908 0.48 -0.4 3,047,158 - ECD_02908 0.48 +0.1 3,047,372 + ECD_02909 0.28 -0.1 3,047,373 - ECD_02909 0.29 +3.4 3,047,424 + ECD_02909 0.36 -0.5 3,047,658 + ECD_02909 0.71 -1.7 3,047,660 + ECD_02909 0.71 -1.0 3,047,682 + ECD_02909 0.75 +0.3 3,047,804 + +0.0 3,047,804 + -1.7 3,047,805 - +0.0 3,047,872 + -2.0 3,047,967 - -0.6 3,047,969 + -1.5 3,047,969 + -0.1
Or see this region's nucleotide sequence