Strain Fitness in Escherichia coli BL21 around ECD_02894

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02892 and ECD_02893 are separated by 132 nucleotidesECD_02893 and ECD_02894 are separated by 1 nucleotidesECD_02894 and ECD_02895 are separated by 204 nucleotidesECD_02895 and ECD_02896 are separated by 52 nucleotides ECD_02892: ECD_02892 - putative ABC transporter permease, at 3,033,548 to 3,035,155 _02892 ECD_02893: ECD_02893 - antitoxin for MqsR toxin; transcriptional repressor, at 3,035,288 to 3,035,683 _02893 ECD_02894: ECD_02894 - GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor, at 3,035,685 to 3,035,981 _02894 ECD_02895: ECD_02895 - transcriptional repressor for mcbR biofilm gene, at 3,036,186 to 3,036,668 _02895 ECD_02896: ECD_02896 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein, at 3,036,721 to 3,037,113 _02896 Position (kb) 3035 3036Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3034.700 kb on - strand, within ECD_02892at 3034.700 kb on - strand, within ECD_02892at 3034.723 kb on + strand, within ECD_02892at 3034.723 kb on + strand, within ECD_02892at 3034.723 kb on + strand, within ECD_02892at 3034.723 kb on + strand, within ECD_02892at 3034.724 kb on - strand, within ECD_02892at 3034.724 kb on - strand, within ECD_02892at 3034.877 kb on - strand, within ECD_02892at 3035.046 kb on + strandat 3035.047 kb on - strandat 3035.117 kb on + strandat 3035.117 kb on + strandat 3035.149 kb on + strandat 3035.149 kb on + strandat 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.152 kb on - strandat 3035.152 kb on - strandat 3035.152 kb on - strandat 3035.152 kb on - strandat 3035.152 kb on - strandat 3035.177 kb on + strandat 3035.194 kb on + strandat 3035.397 kb on - strand, within ECD_02893at 3035.397 kb on - strand, within ECD_02893at 3035.397 kb on - strand, within ECD_02893at 3035.397 kb on - strand, within ECD_02893at 3035.463 kb on - strand, within ECD_02893at 3035.514 kb on - strand, within ECD_02893at 3035.514 kb on - strand, within ECD_02893at 3035.514 kb on - strand, within ECD_02893at 3035.514 kb on - strand, within ECD_02893at 3035.786 kb on + strand, within ECD_02894at 3035.787 kb on - strand, within ECD_02894at 3035.789 kb on + strand, within ECD_02894at 3035.790 kb on - strand, within ECD_02894at 3035.790 kb on - strand, within ECD_02894at 3035.790 kb on - strand, within ECD_02894at 3035.801 kb on - strand, within ECD_02894at 3035.801 kb on - strand, within ECD_02894at 3035.817 kb on - strand, within ECD_02894at 3035.852 kb on + strand, within ECD_02894at 3035.853 kb on - strand, within ECD_02894at 3035.858 kb on + strand, within ECD_02894at 3035.859 kb on - strand, within ECD_02894at 3035.903 kb on + strand, within ECD_02894at 3035.903 kb on + strand, within ECD_02894at 3035.960 kb on + strandat 3035.960 kb on + strandat 3035.960 kb on + strandat 3035.960 kb on + strandat 3035.960 kb on + strandat 3035.961 kb on - strandat 3035.961 kb on - strandat 3035.961 kb on - strandat 3036.047 kb on + strandat 3036.047 kb on + strandat 3036.066 kb on - strandat 3036.117 kb on + strandat 3036.117 kb on + strandat 3036.117 kb on + strandat 3036.117 kb on + strandat 3036.117 kb on + strandat 3036.117 kb on + strandat 3036.118 kb on - strandat 3036.118 kb on - strandat 3036.118 kb on - strandat 3036.118 kb on - strandat 3036.120 kb on - strandat 3036.121 kb on - strandat 3036.138 kb on + strandat 3036.164 kb on + strandat 3036.202 kb on + strandat 3036.202 kb on + strandat 3036.203 kb on - strandat 3036.203 kb on - strandat 3036.253 kb on + strand, within ECD_02895at 3036.324 kb on + strand, within ECD_02895at 3036.338 kb on + strand, within ECD_02895at 3036.449 kb on + strand, within ECD_02895at 3036.574 kb on + strand, within ECD_02895at 3036.574 kb on + strand, within ECD_02895at 3036.575 kb on - strand, within ECD_02895at 3036.621 kb on + strandat 3036.622 kb on - strandat 3036.622 kb on - strandat 3036.646 kb on - strandat 3036.687 kb on + strandat 3036.861 kb on + strand, within ECD_02896at 3036.862 kb on - strand, within ECD_02896at 3036.865 kb on - strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.967 kb on + strand, within ECD_02896at 3036.967 kb on + strand, within ECD_02896at 3036.968 kb on - strand, within ECD_02896at 3036.968 kb on - strand, within ECD_02896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
3,034,700 - ECD_02892 0.72 -0.7
3,034,700 - ECD_02892 0.72 +4.5
3,034,723 + ECD_02892 0.73 +1.6
3,034,723 + ECD_02892 0.73 -3.0
3,034,723 + ECD_02892 0.73 -1.6
3,034,723 + ECD_02892 0.73 -0.1
3,034,724 - ECD_02892 0.73 -2.0
3,034,724 - ECD_02892 0.73 +3.2
3,034,877 - ECD_02892 0.83 +4.3
3,035,046 + -0.9
3,035,047 - +3.0
3,035,117 + -0.5
3,035,117 + -1.0
3,035,149 + -1.2
3,035,149 + +4.0
3,035,151 + -1.4
3,035,151 + +0.2
3,035,151 + -1.0
3,035,151 + -0.8
3,035,151 + -1.7
3,035,152 - -0.8
3,035,152 - -2.6
3,035,152 - -0.0
3,035,152 - -0.6
3,035,152 - -1.1
3,035,177 + -0.1
3,035,194 + -1.6
3,035,397 - ECD_02893 0.28 -1.2
3,035,397 - ECD_02893 0.28 -1.5
3,035,397 - ECD_02893 0.28 -0.9
3,035,397 - ECD_02893 0.28 +3.0
3,035,463 - ECD_02893 0.44 -1.3
3,035,514 - ECD_02893 0.57 +3.8
3,035,514 - ECD_02893 0.57 +4.0
3,035,514 - ECD_02893 0.57 -1.0
3,035,514 - ECD_02893 0.57 +2.9
3,035,786 + ECD_02894 0.34 -1.8
3,035,787 - ECD_02894 0.34 -0.7
3,035,789 + ECD_02894 0.35 -0.9
3,035,790 - ECD_02894 0.35 -1.2
3,035,790 - ECD_02894 0.35 -2.1
3,035,790 - ECD_02894 0.35 -1.8
3,035,801 - ECD_02894 0.39 -1.1
3,035,801 - ECD_02894 0.39 -1.6
3,035,817 - ECD_02894 0.44 -0.4
3,035,852 + ECD_02894 0.56 -1.5
3,035,853 - ECD_02894 0.57 +0.1
3,035,858 + ECD_02894 0.58 -0.5
3,035,859 - ECD_02894 0.59 -1.4
3,035,903 + ECD_02894 0.73 -1.3
3,035,903 + ECD_02894 0.73 -0.4
3,035,960 + -1.2
3,035,960 + -1.4
3,035,960 + -2.6
3,035,960 + +0.4
3,035,960 + -0.9
3,035,961 - -1.0
3,035,961 - -1.6
3,035,961 - +2.5
3,036,047 + +4.1
3,036,047 + -1.1
3,036,066 - -1.1
3,036,117 + -1.1
3,036,117 + -1.5
3,036,117 + -2.4
3,036,117 + -1.8
3,036,117 + -1.3
3,036,117 + +2.1
3,036,118 - +2.5
3,036,118 - +3.4
3,036,118 - -0.8
3,036,118 - -1.0
3,036,120 - -0.8
3,036,121 - -0.3
3,036,138 + -0.4
3,036,164 + -2.2
3,036,202 + -0.9
3,036,202 + +4.4
3,036,203 - +0.4
3,036,203 - -3.5
3,036,253 + ECD_02895 0.14 +3.0
3,036,324 + ECD_02895 0.29 -1.2
3,036,338 + ECD_02895 0.31 +1.5
3,036,449 + ECD_02895 0.54 +4.1
3,036,574 + ECD_02895 0.80 -1.6
3,036,574 + ECD_02895 0.80 +0.5
3,036,575 - ECD_02895 0.81 -1.0
3,036,621 + -1.2
3,036,622 - -0.9
3,036,622 - +3.9
3,036,646 - -0.2
3,036,687 + -1.6
3,036,861 + ECD_02896 0.36 -0.9
3,036,862 - ECD_02896 0.36 -0.1
3,036,865 - ECD_02896 0.37 -1.2
3,036,887 + ECD_02896 0.42 -1.2
3,036,887 + ECD_02896 0.42 -1.2
3,036,887 + ECD_02896 0.42 -0.9
3,036,888 - ECD_02896 0.42 -2.0
3,036,888 - ECD_02896 0.42 +1.6
3,036,888 - ECD_02896 0.42 -2.8
3,036,888 - ECD_02896 0.42 -1.8
3,036,888 - ECD_02896 0.42 +3.9
3,036,888 - ECD_02896 0.42 +3.3
3,036,967 + ECD_02896 0.63 +4.7
3,036,967 + ECD_02896 0.63 -0.9
3,036,968 - ECD_02896 0.63 -2.8
3,036,968 - ECD_02896 0.63 -0.5

Or see this region's nucleotide sequence