Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02861 and ECD_02862 are separated by 173 nucleotides ECD_02862 and ECD_02863 are separated by 48 nucleotides ECD_02863 and ECD_02864 are separated by 291 nucleotides
ECD_02861: ECD_02861 - putative ATP-binding protein, at 3,000,678 to 3,001,391
_02861
ECD_02862: ECD_02862 - putative ATP-binding protein, at 3,001,565 to 3,002,257
_02862
ECD_02863: ECD_02863 - phosphate transporter, at 3,002,306 to 3,003,805
_02863
ECD_02864: ECD_02864 - glutathionylspermidine amidase and glutathionylspermidine synthetase, at 3,004,097 to 3,005,956
_02864
Position (kb)
3002
3003
3004 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 3001.333 kb on - strand at 3001.380 kb on - strand at 3001.750 kb on - strand, within ECD_02862 at 3001.818 kb on + strand, within ECD_02862 at 3001.861 kb on + strand, within ECD_02862 at 3001.862 kb on - strand, within ECD_02862 at 3001.935 kb on - strand, within ECD_02862 at 3001.942 kb on + strand, within ECD_02862 at 3001.957 kb on + strand, within ECD_02862 at 3001.957 kb on + strand, within ECD_02862 at 3001.957 kb on + strand, within ECD_02862 at 3001.958 kb on - strand, within ECD_02862 at 3002.006 kb on - strand, within ECD_02862 at 3002.006 kb on - strand, within ECD_02862 at 3002.032 kb on + strand, within ECD_02862 at 3002.033 kb on - strand, within ECD_02862 at 3002.033 kb on - strand, within ECD_02862 at 3002.368 kb on + strand at 3002.369 kb on - strand at 3002.405 kb on - strand at 3002.405 kb on - strand at 3002.490 kb on + strand, within ECD_02863 at 3002.490 kb on + strand, within ECD_02863 at 3002.491 kb on - strand, within ECD_02863 at 3002.547 kb on + strand, within ECD_02863 at 3002.547 kb on + strand, within ECD_02863 at 3002.547 kb on + strand, within ECD_02863 at 3002.548 kb on - strand, within ECD_02863 at 3002.637 kb on - strand, within ECD_02863 at 3002.678 kb on + strand, within ECD_02863 at 3002.678 kb on + strand, within ECD_02863 at 3002.679 kb on - strand, within ECD_02863 at 3002.683 kb on + strand, within ECD_02863 at 3002.776 kb on + strand, within ECD_02863 at 3002.776 kb on + strand, within ECD_02863 at 3002.777 kb on - strand, within ECD_02863 at 3002.777 kb on - strand, within ECD_02863 at 3002.777 kb on - strand, within ECD_02863 at 3002.830 kb on + strand, within ECD_02863 at 3002.831 kb on - strand, within ECD_02863 at 3002.852 kb on - strand, within ECD_02863 at 3002.864 kb on - strand, within ECD_02863 at 3002.875 kb on + strand, within ECD_02863 at 3002.876 kb on - strand, within ECD_02863 at 3002.903 kb on + strand, within ECD_02863 at 3002.903 kb on + strand, within ECD_02863 at 3002.988 kb on + strand, within ECD_02863 at 3002.988 kb on + strand, within ECD_02863 at 3002.989 kb on - strand, within ECD_02863 at 3002.989 kb on - strand, within ECD_02863 at 3002.989 kb on - strand, within ECD_02863 at 3003.026 kb on - strand, within ECD_02863 at 3003.050 kb on - strand, within ECD_02863 at 3003.172 kb on + strand, within ECD_02863 at 3003.172 kb on + strand, within ECD_02863 at 3003.172 kb on + strand, within ECD_02863 at 3003.173 kb on - strand, within ECD_02863 at 3003.173 kb on - strand, within ECD_02863 at 3003.238 kb on + strand, within ECD_02863 at 3003.238 kb on + strand, within ECD_02863 at 3003.238 kb on + strand, within ECD_02863 at 3003.284 kb on + strand, within ECD_02863 at 3003.366 kb on - strand, within ECD_02863 at 3003.491 kb on - strand, within ECD_02863 at 3003.572 kb on - strand, within ECD_02863 at 3003.585 kb on + strand, within ECD_02863 at 3003.586 kb on - strand, within ECD_02863 at 3003.595 kb on + strand, within ECD_02863 at 3003.596 kb on - strand, within ECD_02863 at 3003.675 kb on + strand at 3003.759 kb on - strand at 3004.087 kb on - strand at 3004.096 kb on - strand at 3004.204 kb on + strand at 3004.204 kb on + strand at 3004.204 kb on + strand at 3004.205 kb on - strand at 3004.205 kb on - strand at 3004.205 kb on - strand at 3004.218 kb on + strand at 3004.219 kb on - strand at 3004.219 kb on - strand at 3004.257 kb on + strand at 3004.257 kb on + strand at 3004.724 kb on - strand, within ECD_02864 at 3004.789 kb on + strand, within ECD_02864
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,001,333 - -4.4 3,001,380 - +3.1 3,001,750 - ECD_02862 0.27 +4.3 3,001,818 + ECD_02862 0.37 -1.2 3,001,861 + ECD_02862 0.43 -0.4 3,001,862 - ECD_02862 0.43 +2.1 3,001,935 - ECD_02862 0.53 -1.3 3,001,942 + ECD_02862 0.54 -1.7 3,001,957 + ECD_02862 0.57 -1.7 3,001,957 + ECD_02862 0.57 -1.2 3,001,957 + ECD_02862 0.57 +3.5 3,001,958 - ECD_02862 0.57 -2.4 3,002,006 - ECD_02862 0.64 -0.2 3,002,006 - ECD_02862 0.64 -1.0 3,002,032 + ECD_02862 0.67 -0.2 3,002,033 - ECD_02862 0.68 -1.6 3,002,033 - ECD_02862 0.68 +3.6 3,002,368 + -1.7 3,002,369 - -0.4 3,002,405 - +4.0 3,002,405 - -2.0 3,002,490 + ECD_02863 0.12 -0.0 3,002,490 + ECD_02863 0.12 -0.6 3,002,491 - ECD_02863 0.12 -3.0 3,002,547 + ECD_02863 0.16 -1.2 3,002,547 + ECD_02863 0.16 +3.4 3,002,547 + ECD_02863 0.16 +0.0 3,002,548 - ECD_02863 0.16 +3.4 3,002,637 - ECD_02863 0.22 -2.6 3,002,678 + ECD_02863 0.25 +1.1 3,002,678 + ECD_02863 0.25 -0.7 3,002,679 - ECD_02863 0.25 -1.7 3,002,683 + ECD_02863 0.25 -1.3 3,002,776 + ECD_02863 0.31 -2.1 3,002,776 + ECD_02863 0.31 -1.5 3,002,777 - ECD_02863 0.31 +0.3 3,002,777 - ECD_02863 0.31 +3.3 3,002,777 - ECD_02863 0.31 -1.4 3,002,830 + ECD_02863 0.35 -3.1 3,002,831 - ECD_02863 0.35 -0.3 3,002,852 - ECD_02863 0.36 -1.4 3,002,864 - ECD_02863 0.37 -1.0 3,002,875 + ECD_02863 0.38 -2.4 3,002,876 - ECD_02863 0.38 -0.9 3,002,903 + ECD_02863 0.40 -1.6 3,002,903 + ECD_02863 0.40 -1.5 3,002,988 + ECD_02863 0.45 -1.3 3,002,988 + ECD_02863 0.45 +3.9 3,002,989 - ECD_02863 0.46 +3.8 3,002,989 - ECD_02863 0.46 +5.8 3,002,989 - ECD_02863 0.46 +3.5 3,003,026 - ECD_02863 0.48 +4.9 3,003,050 - ECD_02863 0.50 -2.3 3,003,172 + ECD_02863 0.58 +4.4 3,003,172 + ECD_02863 0.58 -1.3 3,003,172 + ECD_02863 0.58 +3.8 3,003,173 - ECD_02863 0.58 -0.4 3,003,173 - ECD_02863 0.58 -1.8 3,003,238 + ECD_02863 0.62 -1.4 3,003,238 + ECD_02863 0.62 +0.1 3,003,238 + ECD_02863 0.62 -0.6 3,003,284 + ECD_02863 0.65 -2.7 3,003,366 - ECD_02863 0.71 -1.4 3,003,491 - ECD_02863 0.79 -0.7 3,003,572 - ECD_02863 0.84 +4.5 3,003,585 + ECD_02863 0.85 -1.8 3,003,586 - ECD_02863 0.85 +3.7 3,003,595 + ECD_02863 0.86 -1.4 3,003,596 - ECD_02863 0.86 -0.0 3,003,675 + -1.2 3,003,759 - +4.0 3,004,087 - -0.9 3,004,096 - +4.2 3,004,204 + -1.4 3,004,204 + -0.8 3,004,204 + -1.9 3,004,205 - +2.4 3,004,205 - +3.9 3,004,205 - -1.5 3,004,218 + -0.2 3,004,219 - +4.4 3,004,219 - -0.9 3,004,257 + -2.2 3,004,257 + +3.8 3,004,724 - ECD_02864 0.34 +3.2 3,004,789 + ECD_02864 0.37 -0.6
Or see this region's nucleotide sequence