Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02851 and ECD_02852 overlap by 4 nucleotides ECD_02852 and ECD_02853 are separated by 31 nucleotides ECD_02853 and ECD_02854 overlap by 1 nucleotides
ECD_02851: ECD_02851 - putative saframycin Mx1 synthetase B, at 2,990,792 to 2,992,522
_02851
ECD_02852: ECD_02852 - hypothetical protein, at 2,992,519 to 2,993,433
_02852
ECD_02853: ECD_02853 - hypothetical protein, at 2,993,465 to 2,993,713
_02853
ECD_02854: ECD_02854 - hypothetical protein, at 2,993,713 to 2,994,885
_02854
Position (kb)
2992
2993
2994 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2991.532 kb on - strand, within ECD_02851 at 2991.536 kb on + strand, within ECD_02851 at 2991.593 kb on - strand, within ECD_02851 at 2991.707 kb on - strand, within ECD_02851 at 2992.024 kb on - strand, within ECD_02851 at 2992.065 kb on - strand, within ECD_02851 at 2992.155 kb on - strand, within ECD_02851 at 2992.172 kb on - strand, within ECD_02851 at 2992.184 kb on - strand, within ECD_02851 at 2992.217 kb on - strand, within ECD_02851 at 2992.223 kb on + strand, within ECD_02851 at 2992.223 kb on + strand, within ECD_02851 at 2992.223 kb on + strand, within ECD_02851 at 2992.224 kb on - strand, within ECD_02851 at 2992.225 kb on + strand, within ECD_02851 at 2992.225 kb on + strand, within ECD_02851 at 2992.225 kb on + strand, within ECD_02851 at 2992.226 kb on - strand, within ECD_02851 at 2992.226 kb on - strand, within ECD_02851 at 2992.484 kb on + strand at 2992.485 kb on - strand at 2992.485 kb on - strand at 2992.485 kb on - strand at 2992.498 kb on + strand at 2992.499 kb on - strand at 2992.499 kb on - strand at 2992.564 kb on - strand at 2992.567 kb on + strand at 2992.567 kb on + strand at 2992.567 kb on + strand at 2992.567 kb on + strand at 2992.568 kb on - strand at 2992.568 kb on - strand at 2992.569 kb on + strand at 2992.678 kb on - strand, within ECD_02852 at 2992.716 kb on - strand, within ECD_02852 at 2992.898 kb on - strand, within ECD_02852 at 2992.969 kb on + strand, within ECD_02852 at 2992.969 kb on + strand, within ECD_02852 at 2993.050 kb on - strand, within ECD_02852 at 2993.118 kb on + strand, within ECD_02852 at 2993.119 kb on - strand, within ECD_02852 at 2993.120 kb on + strand, within ECD_02852 at 2993.121 kb on - strand, within ECD_02852 at 2993.134 kb on + strand, within ECD_02852 at 2993.164 kb on + strand, within ECD_02852 at 2993.302 kb on - strand, within ECD_02852 at 2993.356 kb on - strand at 2993.377 kb on - strand at 2993.456 kb on - strand at 2993.469 kb on + strand at 2993.481 kb on + strand at 2993.601 kb on + strand, within ECD_02853 at 2993.602 kb on - strand, within ECD_02853 at 2993.627 kb on - strand, within ECD_02853 at 2993.638 kb on + strand, within ECD_02853 at 2993.720 kb on + strand at 2993.731 kb on + strand at 2993.732 kb on - strand at 2993.797 kb on - strand at 2993.865 kb on + strand, within ECD_02854 at 2993.869 kb on + strand, within ECD_02854 at 2993.869 kb on + strand, within ECD_02854 at 2993.886 kb on + strand, within ECD_02854 at 2993.886 kb on + strand, within ECD_02854 at 2993.972 kb on - strand, within ECD_02854 at 2993.972 kb on - strand, within ECD_02854 at 2994.051 kb on + strand, within ECD_02854 at 2994.134 kb on - strand, within ECD_02854 at 2994.243 kb on + strand, within ECD_02854 at 2994.262 kb on + strand, within ECD_02854 at 2994.263 kb on - strand, within ECD_02854 at 2994.328 kb on + strand, within ECD_02854 at 2994.365 kb on + strand, within ECD_02854 at 2994.420 kb on + strand, within ECD_02854 at 2994.423 kb on + strand, within ECD_02854
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,991,532 - ECD_02851 0.43 -0.2 2,991,536 + ECD_02851 0.43 -1.0 2,991,593 - ECD_02851 0.46 -2.8 2,991,707 - ECD_02851 0.53 -0.5 2,992,024 - ECD_02851 0.71 -1.0 2,992,065 - ECD_02851 0.74 -1.1 2,992,155 - ECD_02851 0.79 -0.2 2,992,172 - ECD_02851 0.80 -2.8 2,992,184 - ECD_02851 0.80 -1.3 2,992,217 - ECD_02851 0.82 -1.3 2,992,223 + ECD_02851 0.83 -0.1 2,992,223 + ECD_02851 0.83 -0.6 2,992,223 + ECD_02851 0.83 -0.8 2,992,224 - ECD_02851 0.83 -0.2 2,992,225 + ECD_02851 0.83 -0.6 2,992,225 + ECD_02851 0.83 -1.6 2,992,225 + ECD_02851 0.83 -1.6 2,992,226 - ECD_02851 0.83 -1.7 2,992,226 - ECD_02851 0.83 -1.3 2,992,484 + -2.1 2,992,485 - -1.8 2,992,485 - -1.0 2,992,485 - -1.4 2,992,498 + -2.5 2,992,499 - +0.7 2,992,499 - -0.3 2,992,564 - -1.5 2,992,567 + -2.9 2,992,567 + -1.7 2,992,567 + -1.8 2,992,567 + -0.5 2,992,568 - -1.8 2,992,568 - -1.3 2,992,569 + -1.8 2,992,678 - ECD_02852 0.17 -2.5 2,992,716 - ECD_02852 0.22 -1.1 2,992,898 - ECD_02852 0.41 -1.5 2,992,969 + ECD_02852 0.49 -1.9 2,992,969 + ECD_02852 0.49 -0.5 2,993,050 - ECD_02852 0.58 -1.8 2,993,118 + ECD_02852 0.65 -0.4 2,993,119 - ECD_02852 0.66 -1.2 2,993,120 + ECD_02852 0.66 -2.5 2,993,121 - ECD_02852 0.66 -1.3 2,993,134 + ECD_02852 0.67 -1.8 2,993,164 + ECD_02852 0.70 -1.2 2,993,302 - ECD_02852 0.86 +1.7 2,993,356 - -0.7 2,993,377 - -1.5 2,993,456 - -1.2 2,993,469 + -0.3 2,993,481 + -1.3 2,993,601 + ECD_02853 0.55 -0.8 2,993,602 - ECD_02853 0.55 -0.8 2,993,627 - ECD_02853 0.65 -2.8 2,993,638 + ECD_02853 0.69 -1.3 2,993,720 + -1.9 2,993,731 + -2.9 2,993,732 - +0.2 2,993,797 - -0.9 2,993,865 + ECD_02854 0.13 -0.8 2,993,869 + ECD_02854 0.13 -1.8 2,993,869 + ECD_02854 0.13 -3.2 2,993,886 + ECD_02854 0.15 -0.5 2,993,886 + ECD_02854 0.15 -1.0 2,993,972 - ECD_02854 0.22 -1.3 2,993,972 - ECD_02854 0.22 -0.5 2,994,051 + ECD_02854 0.29 -3.0 2,994,134 - ECD_02854 0.36 -1.5 2,994,243 + ECD_02854 0.45 -2.0 2,994,262 + ECD_02854 0.47 -1.5 2,994,263 - ECD_02854 0.47 -2.5 2,994,328 + ECD_02854 0.52 -1.4 2,994,365 + ECD_02854 0.56 -1.1 2,994,420 + ECD_02854 0.60 -1.5 2,994,423 + ECD_02854 0.61 -1.6
Or see this region's nucleotide sequence