Strain Fitness in Escherichia coli BL21 around ECD_02852

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02851 and ECD_02852 overlap by 4 nucleotidesECD_02852 and ECD_02853 are separated by 31 nucleotidesECD_02853 and ECD_02854 overlap by 1 nucleotides ECD_02851: ECD_02851 - putative saframycin Mx1 synthetase B, at 2,990,792 to 2,992,522 _02851 ECD_02852: ECD_02852 - hypothetical protein, at 2,992,519 to 2,993,433 _02852 ECD_02853: ECD_02853 - hypothetical protein, at 2,993,465 to 2,993,713 _02853 ECD_02854: ECD_02854 - hypothetical protein, at 2,993,713 to 2,994,885 _02854 Position (kb) 2992 2993 2994Strain fitness (log2 ratio) -3 -2 -1 0 1at 2991.532 kb on - strand, within ECD_02851at 2991.536 kb on + strand, within ECD_02851at 2991.593 kb on - strand, within ECD_02851at 2991.707 kb on - strand, within ECD_02851at 2992.024 kb on - strand, within ECD_02851at 2992.065 kb on - strand, within ECD_02851at 2992.155 kb on - strand, within ECD_02851at 2992.172 kb on - strand, within ECD_02851at 2992.184 kb on - strand, within ECD_02851at 2992.217 kb on - strand, within ECD_02851at 2992.223 kb on + strand, within ECD_02851at 2992.223 kb on + strand, within ECD_02851at 2992.223 kb on + strand, within ECD_02851at 2992.224 kb on - strand, within ECD_02851at 2992.225 kb on + strand, within ECD_02851at 2992.225 kb on + strand, within ECD_02851at 2992.225 kb on + strand, within ECD_02851at 2992.226 kb on - strand, within ECD_02851at 2992.226 kb on - strand, within ECD_02851at 2992.484 kb on + strandat 2992.485 kb on - strandat 2992.485 kb on - strandat 2992.485 kb on - strandat 2992.498 kb on + strandat 2992.499 kb on - strandat 2992.499 kb on - strandat 2992.564 kb on - strandat 2992.567 kb on + strandat 2992.567 kb on + strandat 2992.567 kb on + strandat 2992.567 kb on + strandat 2992.568 kb on - strandat 2992.568 kb on - strandat 2992.569 kb on + strandat 2992.678 kb on - strand, within ECD_02852at 2992.716 kb on - strand, within ECD_02852at 2992.898 kb on - strand, within ECD_02852at 2992.969 kb on + strand, within ECD_02852at 2992.969 kb on + strand, within ECD_02852at 2993.050 kb on - strand, within ECD_02852at 2993.118 kb on + strand, within ECD_02852at 2993.119 kb on - strand, within ECD_02852at 2993.120 kb on + strand, within ECD_02852at 2993.121 kb on - strand, within ECD_02852at 2993.134 kb on + strand, within ECD_02852at 2993.164 kb on + strand, within ECD_02852at 2993.302 kb on - strand, within ECD_02852at 2993.356 kb on - strandat 2993.377 kb on - strandat 2993.456 kb on - strandat 2993.469 kb on + strandat 2993.481 kb on + strandat 2993.601 kb on + strand, within ECD_02853at 2993.602 kb on - strand, within ECD_02853at 2993.627 kb on - strand, within ECD_02853at 2993.638 kb on + strand, within ECD_02853at 2993.720 kb on + strandat 2993.731 kb on + strandat 2993.732 kb on - strandat 2993.797 kb on - strandat 2993.865 kb on + strand, within ECD_02854at 2993.869 kb on + strand, within ECD_02854at 2993.869 kb on + strand, within ECD_02854at 2993.886 kb on + strand, within ECD_02854at 2993.886 kb on + strand, within ECD_02854at 2993.972 kb on - strand, within ECD_02854at 2993.972 kb on - strand, within ECD_02854at 2994.051 kb on + strand, within ECD_02854at 2994.134 kb on - strand, within ECD_02854at 2994.243 kb on + strand, within ECD_02854at 2994.262 kb on + strand, within ECD_02854at 2994.263 kb on - strand, within ECD_02854at 2994.328 kb on + strand, within ECD_02854at 2994.365 kb on + strand, within ECD_02854at 2994.420 kb on + strand, within ECD_02854at 2994.423 kb on + strand, within ECD_02854

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,991,532 - ECD_02851 0.43 -0.2
2,991,536 + ECD_02851 0.43 -1.0
2,991,593 - ECD_02851 0.46 -2.8
2,991,707 - ECD_02851 0.53 -0.5
2,992,024 - ECD_02851 0.71 -1.0
2,992,065 - ECD_02851 0.74 -1.1
2,992,155 - ECD_02851 0.79 -0.2
2,992,172 - ECD_02851 0.80 -2.8
2,992,184 - ECD_02851 0.80 -1.3
2,992,217 - ECD_02851 0.82 -1.3
2,992,223 + ECD_02851 0.83 -0.1
2,992,223 + ECD_02851 0.83 -0.6
2,992,223 + ECD_02851 0.83 -0.8
2,992,224 - ECD_02851 0.83 -0.2
2,992,225 + ECD_02851 0.83 -0.6
2,992,225 + ECD_02851 0.83 -1.6
2,992,225 + ECD_02851 0.83 -1.6
2,992,226 - ECD_02851 0.83 -1.7
2,992,226 - ECD_02851 0.83 -1.3
2,992,484 + -2.1
2,992,485 - -1.8
2,992,485 - -1.0
2,992,485 - -1.4
2,992,498 + -2.5
2,992,499 - +0.7
2,992,499 - -0.3
2,992,564 - -1.5
2,992,567 + -2.9
2,992,567 + -1.7
2,992,567 + -1.8
2,992,567 + -0.5
2,992,568 - -1.8
2,992,568 - -1.3
2,992,569 + -1.8
2,992,678 - ECD_02852 0.17 -2.5
2,992,716 - ECD_02852 0.22 -1.1
2,992,898 - ECD_02852 0.41 -1.5
2,992,969 + ECD_02852 0.49 -1.9
2,992,969 + ECD_02852 0.49 -0.5
2,993,050 - ECD_02852 0.58 -1.8
2,993,118 + ECD_02852 0.65 -0.4
2,993,119 - ECD_02852 0.66 -1.2
2,993,120 + ECD_02852 0.66 -2.5
2,993,121 - ECD_02852 0.66 -1.3
2,993,134 + ECD_02852 0.67 -1.8
2,993,164 + ECD_02852 0.70 -1.2
2,993,302 - ECD_02852 0.86 +1.7
2,993,356 - -0.7
2,993,377 - -1.5
2,993,456 - -1.2
2,993,469 + -0.3
2,993,481 + -1.3
2,993,601 + ECD_02853 0.55 -0.8
2,993,602 - ECD_02853 0.55 -0.8
2,993,627 - ECD_02853 0.65 -2.8
2,993,638 + ECD_02853 0.69 -1.3
2,993,720 + -1.9
2,993,731 + -2.9
2,993,732 - +0.2
2,993,797 - -0.9
2,993,865 + ECD_02854 0.13 -0.8
2,993,869 + ECD_02854 0.13 -1.8
2,993,869 + ECD_02854 0.13 -3.2
2,993,886 + ECD_02854 0.15 -0.5
2,993,886 + ECD_02854 0.15 -1.0
2,993,972 - ECD_02854 0.22 -1.3
2,993,972 - ECD_02854 0.22 -0.5
2,994,051 + ECD_02854 0.29 -3.0
2,994,134 - ECD_02854 0.36 -1.5
2,994,243 + ECD_02854 0.45 -2.0
2,994,262 + ECD_02854 0.47 -1.5
2,994,263 - ECD_02854 0.47 -2.5
2,994,328 + ECD_02854 0.52 -1.4
2,994,365 + ECD_02854 0.56 -1.1
2,994,420 + ECD_02854 0.60 -1.5
2,994,423 + ECD_02854 0.61 -1.6

Or see this region's nucleotide sequence