Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02842 and ECD_02843 are separated by 485 nucleotides ECD_02843 and ECD_02844 are separated by 354 nucleotides
ECD_02842: ECD_02842 - putative secreted and surface-associated lipoprotein mucinase, at 2,974,797 to 2,979,350
_02842
ECD_02843: ECD_02843 - glycolate transporter, at 2,979,836 to 2,981,518
_02843
ECD_02844: ECD_02844 - malate synthase G, at 2,981,873 to 2,984,044
_02844
Position (kb)
2979
2980
2981
2982 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2978.987 kb on + strand at 2978.988 kb on - strand at 2978.988 kb on - strand at 2979.005 kb on + strand at 2979.006 kb on - strand at 2979.011 kb on + strand at 2979.011 kb on + strand at 2979.012 kb on - strand at 2979.012 kb on - strand at 2979.035 kb on + strand at 2979.036 kb on - strand at 2979.146 kb on + strand at 2979.351 kb on + strand at 2979.864 kb on + strand at 2979.864 kb on + strand at 2979.985 kb on + strand at 2979.986 kb on - strand at 2980.184 kb on - strand, within ECD_02843 at 2980.184 kb on - strand, within ECD_02843 at 2980.184 kb on - strand, within ECD_02843 at 2980.217 kb on - strand, within ECD_02843 at 2980.224 kb on + strand, within ECD_02843 at 2980.224 kb on + strand, within ECD_02843 at 2980.224 kb on + strand, within ECD_02843 at 2980.285 kb on + strand, within ECD_02843 at 2980.285 kb on + strand, within ECD_02843 at 2980.289 kb on + strand, within ECD_02843 at 2980.290 kb on - strand, within ECD_02843 at 2980.345 kb on + strand, within ECD_02843 at 2980.345 kb on + strand, within ECD_02843 at 2980.345 kb on + strand, within ECD_02843 at 2980.346 kb on - strand, within ECD_02843 at 2980.351 kb on + strand, within ECD_02843 at 2980.523 kb on + strand, within ECD_02843 at 2980.569 kb on - strand, within ECD_02843 at 2980.612 kb on + strand, within ECD_02843 at 2980.613 kb on - strand, within ECD_02843 at 2980.613 kb on - strand, within ECD_02843 at 2980.615 kb on - strand, within ECD_02843 at 2980.615 kb on - strand, within ECD_02843 at 2980.615 kb on - strand, within ECD_02843 at 2980.648 kb on + strand, within ECD_02843 at 2980.648 kb on + strand, within ECD_02843 at 2980.649 kb on - strand, within ECD_02843 at 2980.762 kb on + strand, within ECD_02843 at 2980.762 kb on + strand, within ECD_02843 at 2980.763 kb on - strand, within ECD_02843 at 2980.787 kb on - strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.788 kb on + strand, within ECD_02843 at 2980.789 kb on - strand, within ECD_02843 at 2980.789 kb on - strand, within ECD_02843 at 2980.789 kb on - strand, within ECD_02843 at 2980.789 kb on - strand, within ECD_02843 at 2980.789 kb on - strand, within ECD_02843 at 2980.792 kb on + strand, within ECD_02843 at 2980.792 kb on + strand, within ECD_02843 at 2980.792 kb on + strand, within ECD_02843 at 2980.793 kb on - strand, within ECD_02843 at 2980.923 kb on - strand, within ECD_02843 at 2981.055 kb on + strand, within ECD_02843 at 2981.056 kb on - strand, within ECD_02843 at 2981.216 kb on - strand, within ECD_02843 at 2981.289 kb on - strand, within ECD_02843 at 2981.299 kb on + strand, within ECD_02843 at 2981.300 kb on - strand, within ECD_02843 at 2981.373 kb on - strand at 2981.373 kb on - strand at 2981.373 kb on - strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.375 kb on + strand at 2981.376 kb on - strand at 2981.376 kb on - strand at 2981.377 kb on + strand at 2981.414 kb on + strand at 2981.441 kb on + strand at 2981.496 kb on + strand at 2981.496 kb on + strand at 2981.497 kb on - strand at 2981.497 kb on - strand at 2981.624 kb on + strand at 2981.645 kb on - strand at 2981.655 kb on + strand at 2981.662 kb on + strand at 2981.663 kb on - strand at 2981.766 kb on + strand at 2981.767 kb on - strand at 2981.828 kb on - strand at 2981.895 kb on - strand at 2981.909 kb on + strand at 2981.926 kb on - strand at 2981.958 kb on - strand at 2982.136 kb on + strand, within ECD_02844 at 2982.137 kb on - strand, within ECD_02844 at 2982.229 kb on - strand, within ECD_02844 at 2982.290 kb on - strand, within ECD_02844 at 2982.377 kb on + strand, within ECD_02844 at 2982.378 kb on - strand, within ECD_02844 at 2982.378 kb on - strand, within ECD_02844 at 2982.386 kb on + strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.387 kb on - strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.489 kb on + strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844 at 2982.490 kb on - strand, within ECD_02844
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,978,987 + +3.8 2,978,988 - +4.3 2,978,988 - +3.6 2,979,005 + +4.3 2,979,006 - +3.6 2,979,011 + +3.7 2,979,011 + +2.6 2,979,012 - +3.5 2,979,012 - +3.7 2,979,035 + +3.3 2,979,036 - +3.8 2,979,146 + +4.2 2,979,351 + +3.8 2,979,864 + +0.2 2,979,864 + +3.9 2,979,985 + +2.0 2,979,986 - -1.8 2,980,184 - ECD_02843 0.21 +4.8 2,980,184 - ECD_02843 0.21 -4.3 2,980,184 - ECD_02843 0.21 +3.8 2,980,217 - ECD_02843 0.23 -3.0 2,980,224 + ECD_02843 0.23 +2.8 2,980,224 + ECD_02843 0.23 +4.1 2,980,224 + ECD_02843 0.23 -1.1 2,980,285 + ECD_02843 0.27 -2.3 2,980,285 + ECD_02843 0.27 -1.7 2,980,289 + ECD_02843 0.27 -3.8 2,980,290 - ECD_02843 0.27 -2.3 2,980,345 + ECD_02843 0.30 +3.9 2,980,345 + ECD_02843 0.30 +3.2 2,980,345 + ECD_02843 0.30 +3.9 2,980,346 - ECD_02843 0.30 +2.8 2,980,351 + ECD_02843 0.31 -3.6 2,980,523 + ECD_02843 0.41 -1.8 2,980,569 - ECD_02843 0.44 -2.1 2,980,612 + ECD_02843 0.46 +3.7 2,980,613 - ECD_02843 0.46 -2.8 2,980,613 - ECD_02843 0.46 -2.6 2,980,615 - ECD_02843 0.46 -3.7 2,980,615 - ECD_02843 0.46 +3.8 2,980,615 - ECD_02843 0.46 -3.4 2,980,648 + ECD_02843 0.48 +3.6 2,980,648 + ECD_02843 0.48 +0.1 2,980,649 - ECD_02843 0.48 -3.9 2,980,762 + ECD_02843 0.55 +3.4 2,980,762 + ECD_02843 0.55 +4.0 2,980,763 - ECD_02843 0.55 -3.8 2,980,787 - ECD_02843 0.57 -3.1 2,980,788 + ECD_02843 0.57 +4.5 2,980,788 + ECD_02843 0.57 -1.6 2,980,788 + ECD_02843 0.57 -0.2 2,980,788 + ECD_02843 0.57 +4.3 2,980,788 + ECD_02843 0.57 +3.4 2,980,788 + ECD_02843 0.57 -1.0 2,980,788 + ECD_02843 0.57 -0.5 2,980,789 - ECD_02843 0.57 +3.8 2,980,789 - ECD_02843 0.57 +4.7 2,980,789 - ECD_02843 0.57 -2.7 2,980,789 - ECD_02843 0.57 -3.1 2,980,789 - ECD_02843 0.57 -4.6 2,980,792 + ECD_02843 0.57 -0.8 2,980,792 + ECD_02843 0.57 -2.7 2,980,792 + ECD_02843 0.57 +3.6 2,980,793 - ECD_02843 0.57 +3.6 2,980,923 - ECD_02843 0.65 -1.5 2,981,055 + ECD_02843 0.72 -2.4 2,981,056 - ECD_02843 0.72 +3.1 2,981,216 - ECD_02843 0.82 -2.4 2,981,289 - ECD_02843 0.86 -2.2 2,981,299 + ECD_02843 0.87 -3.0 2,981,300 - ECD_02843 0.87 -2.1 2,981,373 - -3.3 2,981,373 - -3.0 2,981,373 - -2.7 2,981,375 + -2.0 2,981,375 + +4.2 2,981,375 + +3.9 2,981,375 + +0.2 2,981,375 + -1.1 2,981,375 + -0.8 2,981,375 + +0.2 2,981,376 - -3.3 2,981,376 - -2.3 2,981,377 + -1.0 2,981,414 + -1.8 2,981,441 + -0.5 2,981,496 + -1.6 2,981,496 + -3.1 2,981,497 - -2.6 2,981,497 - -2.1 2,981,624 + +3.9 2,981,645 - -2.9 2,981,655 + +3.6 2,981,662 + +3.0 2,981,663 - +4.4 2,981,766 + -1.1 2,981,767 - +3.7 2,981,828 - +3.7 2,981,895 - -2.7 2,981,909 + -1.0 2,981,926 - -1.3 2,981,958 - -1.8 2,982,136 + ECD_02844 0.12 -1.4 2,982,137 - ECD_02844 0.12 -1.4 2,982,229 - ECD_02844 0.16 -3.7 2,982,290 - ECD_02844 0.19 -4.1 2,982,377 + ECD_02844 0.23 -0.5 2,982,378 - ECD_02844 0.23 -2.1 2,982,378 - ECD_02844 0.23 -0.8 2,982,386 + ECD_02844 0.24 +1.8 2,982,387 - ECD_02844 0.24 -2.6 2,982,387 - ECD_02844 0.24 +3.5 2,982,387 - ECD_02844 0.24 -2.1 2,982,489 + ECD_02844 0.28 -1.5 2,982,489 + ECD_02844 0.28 +3.5 2,982,489 + ECD_02844 0.28 -1.9 2,982,490 - ECD_02844 0.28 -3.2 2,982,490 - ECD_02844 0.28 +2.8 2,982,490 - ECD_02844 0.28 -1.4 2,982,490 - ECD_02844 0.28 -2.3
Or see this region's nucleotide sequence