Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02824 and ECD_02825 are separated by 28 nucleotides ECD_02825 and ECD_02826 are separated by 17 nucleotides ECD_02826 and ECD_02827 are separated by 208 nucleotides ECD_02827 and ECD_02828 are separated by 14 nucleotides
ECD_02823: ECD_02823 - IS1 protein InsB, at 2,957,307 to 2,957,810
_02823
ECD_02824: ECD_02824 - IS1 protein InsA, at 2,957,729 to 2,958,004
_02824
ECD_02825: ECD_02825 - Pyrophosphorylase, at 2,958,033 to 2,958,755
_02825
ECD_02826: ECD_02826 - hypothetical protein, at 2,958,773 to 2,960,149
_02826
ECD_02827: ECD_02827 - Polysialic acid transport ATP-binding KpsT, at 2,960,358 to 2,961,017
_02827
ECD_02828: ECD_02828 - Polysialic acid transport protein kpsM, at 2,961,032 to 2,961,808
_02828
Position (kb) 2958
2959
2960
2961 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 2958.073 kb on - strand at 2958.098 kb on + strand at 2958.099 kb on - strand at 2958.247 kb on - strand, within ECD_02825 at 2958.251 kb on + strand, within ECD_02825 at 2959.256 kb on - strand, within ECD_02826 at 2960.980 kb on + strand at 2961.093 kb on - strand at 2961.115 kb on - strand, within ECD_02828 at 2961.142 kb on - strand, within ECD_02828
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,958,073 - -3.0 2,958,098 + -0.1 2,958,099 - -1.6 2,958,247 - ECD_02825 0.30 -1.0 2,958,251 + ECD_02825 0.30 +1.1 2,959,256 - ECD_02826 0.35 -2.1 2,960,980 + -0.8 2,961,093 - -2.0 2,961,115 - ECD_02828 0.11 -0.7 2,961,142 - ECD_02828 0.14 -1.0
Or see this region's nucleotide sequence