Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02798 and ECD_02811 are separated by 464 nucleotides ECD_02811 and ECD_02812 are separated by 237 nucleotides ECD_02812 and ECD_04360 are separated by 149 nucleotides
ECD_02798: ECD_02798 - hypothetical protein, at 2,942,440 to 2,943,342
_02798
ECD_02811: ECD_02811 - hypothetical protein, at 2,943,807 to 2,944,376
_02811
ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907
_02812
ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182
_04360
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2943.201 kb on + strand, within ECD_02798 at 2943.318 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.352 kb on + strand at 2943.353 kb on - strand at 2943.354 kb on + strand at 2943.354 kb on + strand at 2943.354 kb on + strand at 2943.420 kb on + strand at 2943.421 kb on - strand at 2943.426 kb on + strand at 2943.426 kb on + strand at 2943.427 kb on - strand at 2943.427 kb on - strand at 2943.546 kb on - strand at 2943.593 kb on + strand at 2943.807 kb on - strand at 2943.807 kb on - strand at 2943.807 kb on - strand at 2943.861 kb on - strand at 2943.898 kb on - strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.219 kb on + strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.220 kb on - strand, within ECD_02811 at 2944.268 kb on + strand, within ECD_02811 at 2944.272 kb on + strand, within ECD_02811 at 2944.272 kb on + strand, within ECD_02811 at 2944.273 kb on - strand, within ECD_02811 at 2944.331 kb on + strand at 2944.339 kb on + strand at 2944.340 kb on - strand at 2944.340 kb on - strand at 2944.517 kb on + strand at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.656 kb on + strand, within ECD_02812 at 2944.657 kb on - strand, within ECD_02812 at 2944.657 kb on - strand, within ECD_02812 at 2944.679 kb on + strand, within ECD_02812 at 2944.679 kb on + strand, within ECD_02812 at 2944.680 kb on - strand, within ECD_02812 at 2944.680 kb on - strand, within ECD_02812 at 2944.772 kb on - strand, within ECD_02812 at 2944.835 kb on + strand, within ECD_02812 at 2944.835 kb on + strand, within ECD_02812 at 2944.836 kb on - strand, within ECD_02812 at 2944.836 kb on - strand, within ECD_02812 at 2944.899 kb on + strand at 2944.900 kb on - strand at 2944.900 kb on - strand at 2944.954 kb on - strand at 2944.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,943,201 + ECD_02798 0.84 -0.1 2,943,318 + -2.7 2,943,352 + -2.1 2,943,352 + -0.1 2,943,352 + +0.3 2,943,352 + -2.2 2,943,353 - -1.4 2,943,354 + -1.8 2,943,354 + -0.8 2,943,354 + -1.4 2,943,420 + -2.9 2,943,421 - -0.5 2,943,426 + -1.3 2,943,426 + -0.3 2,943,427 - -1.3 2,943,427 - -0.1 2,943,546 - -2.0 2,943,593 + -0.3 2,943,807 - -1.0 2,943,807 - -1.5 2,943,807 - -2.2 2,943,861 - -2.3 2,943,898 - ECD_02811 0.16 +0.4 2,944,219 + ECD_02811 0.72 -0.6 2,944,219 + ECD_02811 0.72 -0.9 2,944,219 + ECD_02811 0.72 -0.6 2,944,220 - ECD_02811 0.72 -1.9 2,944,220 - ECD_02811 0.72 +0.4 2,944,220 - ECD_02811 0.72 -1.4 2,944,220 - ECD_02811 0.72 -1.5 2,944,268 + ECD_02811 0.81 -1.8 2,944,272 + ECD_02811 0.82 -3.4 2,944,272 + ECD_02811 0.82 -0.4 2,944,273 - ECD_02811 0.82 -0.0 2,944,331 + -1.8 2,944,339 + -1.3 2,944,340 - -1.1 2,944,340 - -2.4 2,944,517 + +4.0 2,944,656 + ECD_02812 0.14 -3.0 2,944,656 + ECD_02812 0.14 -3.3 2,944,656 + ECD_02812 0.14 -1.6 2,944,656 + ECD_02812 0.14 -1.6 2,944,656 + ECD_02812 0.14 -2.2 2,944,656 + ECD_02812 0.14 -1.2 2,944,656 + ECD_02812 0.14 -1.2 2,944,657 - ECD_02812 0.15 -1.1 2,944,657 - ECD_02812 0.15 -0.6 2,944,679 + ECD_02812 0.22 -1.4 2,944,679 + ECD_02812 0.22 -0.3 2,944,680 - ECD_02812 0.22 -0.5 2,944,680 - ECD_02812 0.22 -2.2 2,944,772 - ECD_02812 0.54 -2.0 2,944,835 + ECD_02812 0.75 -3.8 2,944,835 + ECD_02812 0.75 -1.6 2,944,836 - ECD_02812 0.76 -1.3 2,944,836 - ECD_02812 0.76 -0.5 2,944,899 + -1.0 2,944,900 - -0.9 2,944,900 - -1.4 2,944,954 - -1.3 2,944,954 - -2.7
Or see this region's nucleotide sequence