Strain Fitness in Escherichia coli BL21 around ECD_02811

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02798 and ECD_02811 are separated by 464 nucleotidesECD_02811 and ECD_02812 are separated by 237 nucleotidesECD_02812 and ECD_04360 are separated by 149 nucleotides ECD_02798: ECD_02798 - hypothetical protein, at 2,942,440 to 2,943,342 _02798 ECD_02811: ECD_02811 - hypothetical protein, at 2,943,807 to 2,944,376 _02811 ECD_02812: ECD_02812 - hypothetical protein, at 2,944,614 to 2,944,907 _02812 ECD_04360: ECD_04360 - hypothetical protein, at 2,945,057 to 2,945,182 _04360 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2943.201 kb on + strand, within ECD_02798at 2943.318 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.352 kb on + strandat 2943.353 kb on - strandat 2943.354 kb on + strandat 2943.354 kb on + strandat 2943.354 kb on + strandat 2943.420 kb on + strandat 2943.421 kb on - strandat 2943.426 kb on + strandat 2943.426 kb on + strandat 2943.427 kb on - strandat 2943.427 kb on - strandat 2943.546 kb on - strandat 2943.593 kb on + strandat 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.807 kb on - strandat 2943.861 kb on - strandat 2943.898 kb on - strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.219 kb on + strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.220 kb on - strand, within ECD_02811at 2944.268 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.272 kb on + strand, within ECD_02811at 2944.273 kb on - strand, within ECD_02811at 2944.331 kb on + strandat 2944.339 kb on + strandat 2944.340 kb on - strandat 2944.340 kb on - strandat 2944.517 kb on + strandat 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.656 kb on + strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.657 kb on - strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.679 kb on + strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.680 kb on - strand, within ECD_02812at 2944.772 kb on - strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.835 kb on + strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.836 kb on - strand, within ECD_02812at 2944.899 kb on + strandat 2944.900 kb on - strandat 2944.900 kb on - strandat 2944.954 kb on - strandat 2944.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,943,201 + ECD_02798 0.84 -0.1
2,943,318 + -2.7
2,943,352 + -2.1
2,943,352 + -0.1
2,943,352 + +0.3
2,943,352 + -2.2
2,943,353 - -1.4
2,943,354 + -1.8
2,943,354 + -0.8
2,943,354 + -1.4
2,943,420 + -2.9
2,943,421 - -0.5
2,943,426 + -1.3
2,943,426 + -0.3
2,943,427 - -1.3
2,943,427 - -0.1
2,943,546 - -2.0
2,943,593 + -0.3
2,943,807 - -1.0
2,943,807 - -1.5
2,943,807 - -2.2
2,943,861 - -2.3
2,943,898 - ECD_02811 0.16 +0.4
2,944,219 + ECD_02811 0.72 -0.6
2,944,219 + ECD_02811 0.72 -0.9
2,944,219 + ECD_02811 0.72 -0.6
2,944,220 - ECD_02811 0.72 -1.9
2,944,220 - ECD_02811 0.72 +0.4
2,944,220 - ECD_02811 0.72 -1.4
2,944,220 - ECD_02811 0.72 -1.5
2,944,268 + ECD_02811 0.81 -1.8
2,944,272 + ECD_02811 0.82 -3.4
2,944,272 + ECD_02811 0.82 -0.4
2,944,273 - ECD_02811 0.82 -0.0
2,944,331 + -1.8
2,944,339 + -1.3
2,944,340 - -1.1
2,944,340 - -2.4
2,944,517 + +4.0
2,944,656 + ECD_02812 0.14 -3.0
2,944,656 + ECD_02812 0.14 -3.3
2,944,656 + ECD_02812 0.14 -1.6
2,944,656 + ECD_02812 0.14 -1.6
2,944,656 + ECD_02812 0.14 -2.2
2,944,656 + ECD_02812 0.14 -1.2
2,944,656 + ECD_02812 0.14 -1.2
2,944,657 - ECD_02812 0.15 -1.1
2,944,657 - ECD_02812 0.15 -0.6
2,944,679 + ECD_02812 0.22 -1.4
2,944,679 + ECD_02812 0.22 -0.3
2,944,680 - ECD_02812 0.22 -0.5
2,944,680 - ECD_02812 0.22 -2.2
2,944,772 - ECD_02812 0.54 -2.0
2,944,835 + ECD_02812 0.75 -3.8
2,944,835 + ECD_02812 0.75 -1.6
2,944,836 - ECD_02812 0.76 -1.3
2,944,836 - ECD_02812 0.76 -0.5
2,944,899 + -1.0
2,944,900 - -0.9
2,944,900 - -1.4
2,944,954 - -1.3
2,944,954 - -2.7

Or see this region's nucleotide sequence