Strain Fitness in Escherichia coli BL21 around ECD_02776

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02774 and ECD_02775 are separated by 94 nucleotidesECD_02775 and ECD_02776 are separated by 79 nucleotidesECD_02776 and ECD_02777 are separated by 12 nucleotides ECD_02774: ECD_02774 - Zn-dependent metalloprotease-related protein, at 2,920,613 to 2,921,110 _02774 ECD_02775: ECD_02775 - DNA-specific endonuclease I, at 2,921,205 to 2,921,912 _02775 ECD_02776: ECD_02776 - 16S rRNA m(3)U1498 methyltransferase, SAM-dependent, at 2,921,992 to 2,922,723 _02776 ECD_02777: ECD_02777 - glutathione synthetase, at 2,922,736 to 2,923,686 _02777 Position (kb) 2921 2922 2923Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2921.027 kb on - strand, within ECD_02774at 2921.031 kb on + strand, within ECD_02774at 2921.122 kb on - strandat 2921.172 kb on - strandat 2921.199 kb on + strandat 2921.199 kb on + strandat 2921.199 kb on + strandat 2921.200 kb on - strandat 2921.208 kb on + strandat 2921.208 kb on + strandat 2921.209 kb on - strandat 2921.222 kb on + strandat 2921.222 kb on + strandat 2921.223 kb on - strandat 2921.223 kb on - strandat 2921.277 kb on - strand, within ECD_02775at 2921.354 kb on + strand, within ECD_02775at 2921.443 kb on + strand, within ECD_02775at 2921.444 kb on - strand, within ECD_02775at 2921.525 kb on + strand, within ECD_02775at 2921.612 kb on + strand, within ECD_02775at 2921.613 kb on - strand, within ECD_02775at 2921.617 kb on - strand, within ECD_02775at 2921.617 kb on - strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.730 kb on + strand, within ECD_02775at 2921.731 kb on - strand, within ECD_02775at 2921.731 kb on - strand, within ECD_02775at 2921.731 kb on - strand, within ECD_02775at 2921.731 kb on - strand, within ECD_02775at 2921.731 kb on - strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.736 kb on + strand, within ECD_02775at 2921.737 kb on - strand, within ECD_02775at 2921.737 kb on - strand, within ECD_02775at 2921.737 kb on - strand, within ECD_02775at 2921.739 kb on - strand, within ECD_02775at 2921.739 kb on - strand, within ECD_02775at 2921.751 kb on + strand, within ECD_02775at 2921.808 kb on + strand, within ECD_02775at 2921.870 kb on + strandat 2921.910 kb on + strandat 2921.911 kb on - strandat 2921.911 kb on - strandat 2921.915 kb on + strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.916 kb on - strandat 2921.956 kb on + strandat 2921.957 kb on - strandat 2921.957 kb on - strandat 2921.987 kb on + strandat 2921.991 kb on + strandat 2921.991 kb on + strandat 2921.991 kb on + strandat 2921.992 kb on - strandat 2921.992 kb on - strandat 2921.992 kb on - strandat 2922.010 kb on + strandat 2922.010 kb on + strandat 2922.010 kb on + strandat 2922.010 kb on + strandat 2922.010 kb on + strandat 2922.011 kb on - strandat 2922.084 kb on - strand, within ECD_02776at 2922.084 kb on - strand, within ECD_02776at 2922.153 kb on + strand, within ECD_02776at 2922.228 kb on + strand, within ECD_02776at 2922.229 kb on - strand, within ECD_02776at 2922.229 kb on - strand, within ECD_02776at 2922.302 kb on + strand, within ECD_02776at 2922.302 kb on + strand, within ECD_02776at 2922.302 kb on + strand, within ECD_02776at 2922.302 kb on + strand, within ECD_02776at 2922.342 kb on + strand, within ECD_02776at 2922.343 kb on - strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.531 kb on + strand, within ECD_02776at 2922.532 kb on - strand, within ECD_02776at 2922.532 kb on - strand, within ECD_02776at 2922.532 kb on - strand, within ECD_02776at 2922.701 kb on + strandat 2922.702 kb on - strandat 2922.702 kb on - strandat 2922.805 kb on - strandat 2922.844 kb on + strand, within ECD_02777at 2922.844 kb on + strand, within ECD_02777at 2922.845 kb on - strand, within ECD_02777at 2922.846 kb on + strand, within ECD_02777at 2922.846 kb on + strand, within ECD_02777at 2922.847 kb on - strand, within ECD_02777at 2922.847 kb on - strand, within ECD_02777at 2922.922 kb on + strand, within ECD_02777at 2922.922 kb on + strand, within ECD_02777at 2922.993 kb on + strand, within ECD_02777at 2923.020 kb on + strand, within ECD_02777at 2923.020 kb on + strand, within ECD_02777at 2923.024 kb on + strand, within ECD_02777at 2923.024 kb on + strand, within ECD_02777at 2923.025 kb on - strand, within ECD_02777at 2923.033 kb on + strand, within ECD_02777at 2923.034 kb on - strand, within ECD_02777at 2923.034 kb on - strand, within ECD_02777at 2923.035 kb on + strand, within ECD_02777at 2923.075 kb on - strand, within ECD_02777at 2923.175 kb on + strand, within ECD_02777at 2923.212 kb on + strand, within ECD_02777at 2923.212 kb on + strand, within ECD_02777at 2923.396 kb on + strand, within ECD_02777at 2923.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,921,027 - ECD_02774 0.83 -0.6
2,921,031 + ECD_02774 0.84 -2.4
2,921,122 - -1.3
2,921,172 - -1.4
2,921,199 + -0.8
2,921,199 + +3.0
2,921,199 + -1.6
2,921,200 - -2.6
2,921,208 + -2.4
2,921,208 + +3.3
2,921,209 - +3.0
2,921,222 + +4.0
2,921,222 + -1.4
2,921,223 - -2.0
2,921,223 - +3.4
2,921,277 - ECD_02775 0.10 -1.0
2,921,354 + ECD_02775 0.21 +3.6
2,921,443 + ECD_02775 0.34 -1.9
2,921,444 - ECD_02775 0.34 -1.0
2,921,525 + ECD_02775 0.45 -2.3
2,921,612 + ECD_02775 0.57 -2.1
2,921,613 - ECD_02775 0.58 -1.6
2,921,617 - ECD_02775 0.58 +3.3
2,921,617 - ECD_02775 0.58 +4.1
2,921,730 + ECD_02775 0.74 -0.7
2,921,730 + ECD_02775 0.74 +3.6
2,921,730 + ECD_02775 0.74 +2.9
2,921,730 + ECD_02775 0.74 -2.1
2,921,730 + ECD_02775 0.74 -1.2
2,921,730 + ECD_02775 0.74 +3.4
2,921,730 + ECD_02775 0.74 +3.5
2,921,731 - ECD_02775 0.74 -1.5
2,921,731 - ECD_02775 0.74 +3.4
2,921,731 - ECD_02775 0.74 -0.2
2,921,731 - ECD_02775 0.74 -1.2
2,921,731 - ECD_02775 0.74 +3.1
2,921,736 + ECD_02775 0.75 -1.8
2,921,736 + ECD_02775 0.75 -2.4
2,921,736 + ECD_02775 0.75 -4.2
2,921,736 + ECD_02775 0.75 -1.4
2,921,736 + ECD_02775 0.75 -2.5
2,921,736 + ECD_02775 0.75 -3.1
2,921,737 - ECD_02775 0.75 +3.4
2,921,737 - ECD_02775 0.75 -1.3
2,921,737 - ECD_02775 0.75 +5.1
2,921,739 - ECD_02775 0.75 -1.4
2,921,739 - ECD_02775 0.75 -1.7
2,921,751 + ECD_02775 0.77 +3.9
2,921,808 + ECD_02775 0.85 -2.9
2,921,870 + -0.9
2,921,910 + -1.9
2,921,911 - -0.4
2,921,911 - -1.4
2,921,915 + -1.4
2,921,916 - -1.4
2,921,916 - +4.5
2,921,916 - -1.4
2,921,916 - +3.8
2,921,916 - -2.1
2,921,916 - -1.7
2,921,916 - -0.7
2,921,916 - +3.8
2,921,916 - +4.3
2,921,956 + -0.5
2,921,957 - -0.8
2,921,957 - -0.5
2,921,987 + -1.2
2,921,991 + -1.3
2,921,991 + -0.2
2,921,991 + +2.9
2,921,992 - -0.9
2,921,992 - -1.1
2,921,992 - -1.6
2,922,010 + -0.9
2,922,010 + +3.4
2,922,010 + -1.1
2,922,010 + +3.6
2,922,010 + +3.2
2,922,011 - +3.2
2,922,084 - ECD_02776 0.13 +4.2
2,922,084 - ECD_02776 0.13 +2.9
2,922,153 + ECD_02776 0.22 +1.8
2,922,228 + ECD_02776 0.32 -3.0
2,922,229 - ECD_02776 0.32 +3.1
2,922,229 - ECD_02776 0.32 +3.5
2,922,302 + ECD_02776 0.42 -1.5
2,922,302 + ECD_02776 0.42 -0.6
2,922,302 + ECD_02776 0.42 -0.1
2,922,302 + ECD_02776 0.42 -0.5
2,922,342 + ECD_02776 0.48 +0.1
2,922,343 - ECD_02776 0.48 -1.1
2,922,531 + ECD_02776 0.74 -0.4
2,922,531 + ECD_02776 0.74 -1.1
2,922,531 + ECD_02776 0.74 -1.2
2,922,531 + ECD_02776 0.74 -1.2
2,922,531 + ECD_02776 0.74 +1.7
2,922,531 + ECD_02776 0.74 -1.9
2,922,531 + ECD_02776 0.74 +3.5
2,922,531 + ECD_02776 0.74 +3.6
2,922,532 - ECD_02776 0.74 -0.9
2,922,532 - ECD_02776 0.74 -0.4
2,922,532 - ECD_02776 0.74 +3.4
2,922,701 + +4.1
2,922,702 - +1.4
2,922,702 - -0.2
2,922,805 - +2.1
2,922,844 + ECD_02777 0.11 +3.5
2,922,844 + ECD_02777 0.11 +2.5
2,922,845 - ECD_02777 0.11 +3.6
2,922,846 + ECD_02777 0.12 +2.7
2,922,846 + ECD_02777 0.12 +2.4
2,922,847 - ECD_02777 0.12 +1.8
2,922,847 - ECD_02777 0.12 +2.3
2,922,922 + ECD_02777 0.20 +3.2
2,922,922 + ECD_02777 0.20 +2.9
2,922,993 + ECD_02777 0.27 +2.7
2,923,020 + ECD_02777 0.30 +3.4
2,923,020 + ECD_02777 0.30 +3.8
2,923,024 + ECD_02777 0.30 +2.6
2,923,024 + ECD_02777 0.30 +2.1
2,923,025 - ECD_02777 0.30 +2.2
2,923,033 + ECD_02777 0.31 +2.8
2,923,034 - ECD_02777 0.31 +1.8
2,923,034 - ECD_02777 0.31 +2.5
2,923,035 + ECD_02777 0.31 +2.2
2,923,075 - ECD_02777 0.36 +3.3
2,923,175 + ECD_02777 0.46 +2.5
2,923,212 + ECD_02777 0.50 +3.2
2,923,212 + ECD_02777 0.50 +4.3
2,923,396 + ECD_02777 0.69 +2.8
2,923,673 + -1.6

Or see this region's nucleotide sequence