Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02774 and ECD_02775 are separated by 94 nucleotides ECD_02775 and ECD_02776 are separated by 79 nucleotides ECD_02776 and ECD_02777 are separated by 12 nucleotides
ECD_02774: ECD_02774 - Zn-dependent metalloprotease-related protein, at 2,920,613 to 2,921,110
_02774
ECD_02775: ECD_02775 - DNA-specific endonuclease I, at 2,921,205 to 2,921,912
_02775
ECD_02776: ECD_02776 - 16S rRNA m(3)U1498 methyltransferase, SAM-dependent, at 2,921,992 to 2,922,723
_02776
ECD_02777: ECD_02777 - glutathione synthetase, at 2,922,736 to 2,923,686
_02777
Position (kb)
2921
2922
2923 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2921.027 kb on - strand, within ECD_02774 at 2921.031 kb on + strand, within ECD_02774 at 2921.122 kb on - strand at 2921.172 kb on - strand at 2921.199 kb on + strand at 2921.199 kb on + strand at 2921.199 kb on + strand at 2921.200 kb on - strand at 2921.208 kb on + strand at 2921.208 kb on + strand at 2921.209 kb on - strand at 2921.222 kb on + strand at 2921.222 kb on + strand at 2921.223 kb on - strand at 2921.223 kb on - strand at 2921.277 kb on - strand, within ECD_02775 at 2921.354 kb on + strand, within ECD_02775 at 2921.443 kb on + strand, within ECD_02775 at 2921.444 kb on - strand, within ECD_02775 at 2921.525 kb on + strand, within ECD_02775 at 2921.612 kb on + strand, within ECD_02775 at 2921.613 kb on - strand, within ECD_02775 at 2921.617 kb on - strand, within ECD_02775 at 2921.617 kb on - strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.730 kb on + strand, within ECD_02775 at 2921.731 kb on - strand, within ECD_02775 at 2921.731 kb on - strand, within ECD_02775 at 2921.731 kb on - strand, within ECD_02775 at 2921.731 kb on - strand, within ECD_02775 at 2921.731 kb on - strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.736 kb on + strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.737 kb on - strand, within ECD_02775 at 2921.739 kb on - strand, within ECD_02775 at 2921.739 kb on - strand, within ECD_02775 at 2921.751 kb on + strand, within ECD_02775 at 2921.808 kb on + strand, within ECD_02775 at 2921.870 kb on + strand at 2921.910 kb on + strand at 2921.911 kb on - strand at 2921.911 kb on - strand at 2921.915 kb on + strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.916 kb on - strand at 2921.956 kb on + strand at 2921.957 kb on - strand at 2921.957 kb on - strand at 2921.987 kb on + strand at 2921.991 kb on + strand at 2921.991 kb on + strand at 2921.991 kb on + strand at 2921.992 kb on - strand at 2921.992 kb on - strand at 2921.992 kb on - strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.010 kb on + strand at 2922.011 kb on - strand at 2922.084 kb on - strand, within ECD_02776 at 2922.084 kb on - strand, within ECD_02776 at 2922.153 kb on + strand, within ECD_02776 at 2922.228 kb on + strand, within ECD_02776 at 2922.229 kb on - strand, within ECD_02776 at 2922.229 kb on - strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.302 kb on + strand, within ECD_02776 at 2922.342 kb on + strand, within ECD_02776 at 2922.343 kb on - strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.531 kb on + strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.532 kb on - strand, within ECD_02776 at 2922.701 kb on + strand at 2922.702 kb on - strand at 2922.702 kb on - strand at 2922.805 kb on - strand at 2922.844 kb on + strand, within ECD_02777 at 2922.844 kb on + strand, within ECD_02777 at 2922.845 kb on - strand, within ECD_02777 at 2922.846 kb on + strand, within ECD_02777 at 2922.846 kb on + strand, within ECD_02777 at 2922.847 kb on - strand, within ECD_02777 at 2922.847 kb on - strand, within ECD_02777 at 2922.922 kb on + strand, within ECD_02777 at 2922.922 kb on + strand, within ECD_02777 at 2922.993 kb on + strand, within ECD_02777 at 2923.020 kb on + strand, within ECD_02777 at 2923.020 kb on + strand, within ECD_02777 at 2923.024 kb on + strand, within ECD_02777 at 2923.024 kb on + strand, within ECD_02777 at 2923.025 kb on - strand, within ECD_02777 at 2923.033 kb on + strand, within ECD_02777 at 2923.034 kb on - strand, within ECD_02777 at 2923.034 kb on - strand, within ECD_02777 at 2923.035 kb on + strand, within ECD_02777 at 2923.075 kb on - strand, within ECD_02777 at 2923.175 kb on + strand, within ECD_02777 at 2923.212 kb on + strand, within ECD_02777 at 2923.212 kb on + strand, within ECD_02777 at 2923.396 kb on + strand, within ECD_02777 at 2923.673 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,921,027 - ECD_02774 0.83 -0.6 2,921,031 + ECD_02774 0.84 -2.4 2,921,122 - -1.3 2,921,172 - -1.4 2,921,199 + -0.8 2,921,199 + +3.0 2,921,199 + -1.6 2,921,200 - -2.6 2,921,208 + -2.4 2,921,208 + +3.3 2,921,209 - +3.0 2,921,222 + +4.0 2,921,222 + -1.4 2,921,223 - -2.0 2,921,223 - +3.4 2,921,277 - ECD_02775 0.10 -1.0 2,921,354 + ECD_02775 0.21 +3.6 2,921,443 + ECD_02775 0.34 -1.9 2,921,444 - ECD_02775 0.34 -1.0 2,921,525 + ECD_02775 0.45 -2.3 2,921,612 + ECD_02775 0.57 -2.1 2,921,613 - ECD_02775 0.58 -1.6 2,921,617 - ECD_02775 0.58 +3.3 2,921,617 - ECD_02775 0.58 +4.1 2,921,730 + ECD_02775 0.74 -0.7 2,921,730 + ECD_02775 0.74 +3.6 2,921,730 + ECD_02775 0.74 +2.9 2,921,730 + ECD_02775 0.74 -2.1 2,921,730 + ECD_02775 0.74 -1.2 2,921,730 + ECD_02775 0.74 +3.4 2,921,730 + ECD_02775 0.74 +3.5 2,921,731 - ECD_02775 0.74 -1.5 2,921,731 - ECD_02775 0.74 +3.4 2,921,731 - ECD_02775 0.74 -0.2 2,921,731 - ECD_02775 0.74 -1.2 2,921,731 - ECD_02775 0.74 +3.1 2,921,736 + ECD_02775 0.75 -1.8 2,921,736 + ECD_02775 0.75 -2.4 2,921,736 + ECD_02775 0.75 -4.2 2,921,736 + ECD_02775 0.75 -1.4 2,921,736 + ECD_02775 0.75 -2.5 2,921,736 + ECD_02775 0.75 -3.1 2,921,737 - ECD_02775 0.75 +3.4 2,921,737 - ECD_02775 0.75 -1.3 2,921,737 - ECD_02775 0.75 +5.1 2,921,739 - ECD_02775 0.75 -1.4 2,921,739 - ECD_02775 0.75 -1.7 2,921,751 + ECD_02775 0.77 +3.9 2,921,808 + ECD_02775 0.85 -2.9 2,921,870 + -0.9 2,921,910 + -1.9 2,921,911 - -0.4 2,921,911 - -1.4 2,921,915 + -1.4 2,921,916 - -1.4 2,921,916 - +4.5 2,921,916 - -1.4 2,921,916 - +3.8 2,921,916 - -2.1 2,921,916 - -1.7 2,921,916 - -0.7 2,921,916 - +3.8 2,921,916 - +4.3 2,921,956 + -0.5 2,921,957 - -0.8 2,921,957 - -0.5 2,921,987 + -1.2 2,921,991 + -1.3 2,921,991 + -0.2 2,921,991 + +2.9 2,921,992 - -0.9 2,921,992 - -1.1 2,921,992 - -1.6 2,922,010 + -0.9 2,922,010 + +3.4 2,922,010 + -1.1 2,922,010 + +3.6 2,922,010 + +3.2 2,922,011 - +3.2 2,922,084 - ECD_02776 0.13 +4.2 2,922,084 - ECD_02776 0.13 +2.9 2,922,153 + ECD_02776 0.22 +1.8 2,922,228 + ECD_02776 0.32 -3.0 2,922,229 - ECD_02776 0.32 +3.1 2,922,229 - ECD_02776 0.32 +3.5 2,922,302 + ECD_02776 0.42 -1.5 2,922,302 + ECD_02776 0.42 -0.6 2,922,302 + ECD_02776 0.42 -0.1 2,922,302 + ECD_02776 0.42 -0.5 2,922,342 + ECD_02776 0.48 +0.1 2,922,343 - ECD_02776 0.48 -1.1 2,922,531 + ECD_02776 0.74 -0.4 2,922,531 + ECD_02776 0.74 -1.1 2,922,531 + ECD_02776 0.74 -1.2 2,922,531 + ECD_02776 0.74 -1.2 2,922,531 + ECD_02776 0.74 +1.7 2,922,531 + ECD_02776 0.74 -1.9 2,922,531 + ECD_02776 0.74 +3.5 2,922,531 + ECD_02776 0.74 +3.6 2,922,532 - ECD_02776 0.74 -0.9 2,922,532 - ECD_02776 0.74 -0.4 2,922,532 - ECD_02776 0.74 +3.4 2,922,701 + +4.1 2,922,702 - +1.4 2,922,702 - -0.2 2,922,805 - +2.1 2,922,844 + ECD_02777 0.11 +3.5 2,922,844 + ECD_02777 0.11 +2.5 2,922,845 - ECD_02777 0.11 +3.6 2,922,846 + ECD_02777 0.12 +2.7 2,922,846 + ECD_02777 0.12 +2.4 2,922,847 - ECD_02777 0.12 +1.8 2,922,847 - ECD_02777 0.12 +2.3 2,922,922 + ECD_02777 0.20 +3.2 2,922,922 + ECD_02777 0.20 +2.9 2,922,993 + ECD_02777 0.27 +2.7 2,923,020 + ECD_02777 0.30 +3.4 2,923,020 + ECD_02777 0.30 +3.8 2,923,024 + ECD_02777 0.30 +2.6 2,923,024 + ECD_02777 0.30 +2.1 2,923,025 - ECD_02777 0.30 +2.2 2,923,033 + ECD_02777 0.31 +2.8 2,923,034 - ECD_02777 0.31 +1.8 2,923,034 - ECD_02777 0.31 +2.5 2,923,035 + ECD_02777 0.31 +2.2 2,923,075 - ECD_02777 0.36 +3.3 2,923,175 + ECD_02777 0.46 +2.5 2,923,212 + ECD_02777 0.50 +3.2 2,923,212 + ECD_02777 0.50 +4.3 2,923,396 + ECD_02777 0.69 +2.8 2,923,673 + -1.6
Or see this region's nucleotide sequence