Strain Fitness in Escherichia coli BL21 around ECD_02623

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02622 and ECD_04351 are separated by 138 nucleotidesECD_04351 and ECD_02623 are separated by 13 nucleotidesECD_02623 and ECD_02624 are separated by 59 nucleotides ECD_02622: ECD_02622 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis, at 2,737,336 to 2,738,007 _02622 ECD_04351: ECD_04351 - membrane stress resistance protein, at 2,738,146 to 2,738,286 _04351 ECD_02623: ECD_02623 - TPM domain protein, putative phosphatase, at 2,738,300 to 2,739,172 _02623 ECD_02624: ECD_02624 - enolase, at 2,739,232 to 2,740,530 _02624 Position (kb) 2738 2739 2740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2737.324 kb on - strandat 2737.352 kb on + strandat 2737.356 kb on + strandat 2737.356 kb on + strandat 2737.487 kb on - strand, within ECD_02622at 2737.634 kb on - strand, within ECD_02622at 2737.668 kb on + strand, within ECD_02622at 2737.813 kb on - strand, within ECD_02622at 2737.813 kb on - strand, within ECD_02622at 2738.008 kb on - strandat 2738.008 kb on - strandat 2738.029 kb on - strandat 2738.401 kb on + strand, within ECD_02623at 2738.484 kb on + strand, within ECD_02623at 2738.626 kb on - strand, within ECD_02623at 2738.785 kb on + strand, within ECD_02623at 2739.015 kb on + strand, within ECD_02623at 2739.020 kb on - strand, within ECD_02623at 2739.036 kb on + strand, within ECD_02623at 2739.042 kb on + strand, within ECD_02623at 2739.182 kb on - strandat 2739.233 kb on + strandat 2739.233 kb on + strandat 2739.234 kb on - strandat 2739.234 kb on - strandat 2739.234 kb on - strandat 2739.234 kb on - strandat 2739.267 kb on - strandat 2739.267 kb on - strandat 2739.267 kb on - strandat 2739.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,737,324 - +0.1
2,737,352 + +0.4
2,737,356 + -1.6
2,737,356 + +1.1
2,737,487 - ECD_02622 0.22 -1.2
2,737,634 - ECD_02622 0.44 -0.5
2,737,668 + ECD_02622 0.49 -0.6
2,737,813 - ECD_02622 0.71 -3.3
2,737,813 - ECD_02622 0.71 -0.2
2,738,008 - -1.8
2,738,008 - +4.6
2,738,029 - +4.5
2,738,401 + ECD_02623 0.12 +0.4
2,738,484 + ECD_02623 0.21 -0.5
2,738,626 - ECD_02623 0.37 -1.6
2,738,785 + ECD_02623 0.56 -1.9
2,739,015 + ECD_02623 0.82 -1.0
2,739,020 - ECD_02623 0.82 -1.2
2,739,036 + ECD_02623 0.84 +1.0
2,739,042 + ECD_02623 0.85 -2.6
2,739,182 - +4.8
2,739,233 + -1.9
2,739,233 + +4.6
2,739,234 - -1.1
2,739,234 - -1.1
2,739,234 - -1.6
2,739,234 - -0.7
2,739,267 - -2.8
2,739,267 - -1.9
2,739,267 - -1.9
2,739,267 - -1.6

Or see this region's nucleotide sequence