Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02619 and ECD_02620 are separated by 26 nucleotides ECD_02620 and ECD_02621 are separated by 634 nucleotides
ECD_02619: ECD_02619 - putative MFS transporter, inner membrane protein, at 2,732,753 to 2,734,030
_02619
ECD_02620: ECD_02620 - putative kinase, at 2,734,057 to 2,735,535
_02620
ECD_02621: ECD_02621 - hypothetical protein, at 2,736,170 to 2,737,018
_02621
Position (kb)
2734
2735
2736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2733.094 kb on - strand, within ECD_02619 at 2733.142 kb on + strand, within ECD_02619 at 2733.195 kb on + strand, within ECD_02619 at 2733.195 kb on + strand, within ECD_02619 at 2733.196 kb on - strand, within ECD_02619 at 2733.215 kb on - strand, within ECD_02619 at 2733.275 kb on - strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.281 kb on + strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.282 kb on - strand, within ECD_02619 at 2733.283 kb on + strand, within ECD_02619 at 2733.294 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.462 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.489 kb on - strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.503 kb on + strand, within ECD_02619 at 2733.504 kb on - strand, within ECD_02619 at 2733.504 kb on - strand, within ECD_02619 at 2733.530 kb on + strand, within ECD_02619 at 2733.531 kb on - strand, within ECD_02619 at 2733.555 kb on + strand, within ECD_02619 at 2733.588 kb on + strand, within ECD_02619 at 2733.588 kb on + strand, within ECD_02619 at 2733.589 kb on - strand, within ECD_02619 at 2733.599 kb on + strand, within ECD_02619 at 2733.600 kb on - strand, within ECD_02619 at 2733.600 kb on - strand, within ECD_02619 at 2733.664 kb on - strand, within ECD_02619 at 2733.688 kb on + strand, within ECD_02619 at 2733.746 kb on + strand, within ECD_02619 at 2733.746 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.800 kb on + strand, within ECD_02619 at 2733.801 kb on - strand, within ECD_02619 at 2733.806 kb on - strand, within ECD_02619 at 2733.820 kb on - strand, within ECD_02619 at 2733.823 kb on + strand, within ECD_02619 at 2733.824 kb on - strand, within ECD_02619 at 2733.871 kb on + strand, within ECD_02619 at 2733.872 kb on - strand, within ECD_02619 at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.919 kb on + strand at 2733.920 kb on - strand at 2733.920 kb on - strand at 2733.920 kb on - strand at 2733.964 kb on + strand at 2734.018 kb on + strand at 2734.018 kb on + strand at 2734.018 kb on + strand at 2734.019 kb on - strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.028 kb on + strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.029 kb on - strand at 2734.043 kb on - strand at 2734.069 kb on + strand at 2734.076 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.117 kb on + strand at 2734.118 kb on - strand at 2734.157 kb on + strand at 2734.160 kb on + strand at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.226 kb on + strand, within ECD_02620 at 2734.269 kb on + strand, within ECD_02620 at 2734.269 kb on + strand, within ECD_02620 at 2734.278 kb on + strand, within ECD_02620 at 2734.278 kb on + strand, within ECD_02620 at 2734.390 kb on + strand, within ECD_02620 at 2734.401 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.417 kb on + strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.418 kb on - strand, within ECD_02620 at 2734.467 kb on + strand, within ECD_02620 at 2734.468 kb on - strand, within ECD_02620 at 2734.487 kb on - strand, within ECD_02620 at 2734.487 kb on - strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.510 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.512 kb on + strand, within ECD_02620 at 2734.551 kb on + strand, within ECD_02620 at 2734.552 kb on - strand, within ECD_02620 at 2734.557 kb on + strand, within ECD_02620 at 2734.572 kb on + strand, within ECD_02620 at 2734.573 kb on - strand, within ECD_02620 at 2734.614 kb on + strand, within ECD_02620 at 2734.691 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.750 kb on + strand, within ECD_02620 at 2734.751 kb on - strand, within ECD_02620 at 2734.751 kb on - strand, within ECD_02620 at 2734.802 kb on - strand, within ECD_02620 at 2734.802 kb on - strand, within ECD_02620 at 2734.812 kb on + strand, within ECD_02620 at 2734.812 kb on + strand, within ECD_02620 at 2734.821 kb on + strand, within ECD_02620 at 2734.822 kb on - strand, within ECD_02620 at 2734.840 kb on + strand, within ECD_02620 at 2734.841 kb on - strand, within ECD_02620 at 2734.849 kb on + strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.911 kb on - strand, within ECD_02620 at 2734.953 kb on - strand, within ECD_02620 at 2734.989 kb on + strand, within ECD_02620 at 2735.038 kb on + strand, within ECD_02620 at 2735.080 kb on + strand, within ECD_02620 at 2735.090 kb on + strand, within ECD_02620 at 2735.090 kb on + strand, within ECD_02620 at 2735.090 kb on + strand, within ECD_02620 at 2735.090 kb on + strand, within ECD_02620 at 2735.091 kb on - strand, within ECD_02620 at 2735.091 kb on - strand, within ECD_02620 at 2735.091 kb on - strand, within ECD_02620 at 2735.091 kb on - strand, within ECD_02620 at 2735.092 kb on + strand, within ECD_02620 at 2735.093 kb on - strand, within ECD_02620 at 2735.093 kb on - strand, within ECD_02620 at 2735.138 kb on - strand, within ECD_02620 at 2735.145 kb on + strand, within ECD_02620 at 2735.145 kb on + strand, within ECD_02620 at 2735.145 kb on + strand, within ECD_02620 at 2735.301 kb on + strand, within ECD_02620 at 2735.302 kb on - strand, within ECD_02620 at 2735.370 kb on + strand, within ECD_02620 at 2735.371 kb on - strand, within ECD_02620 at 2735.371 kb on - strand, within ECD_02620 at 2735.377 kb on - strand, within ECD_02620 at 2735.404 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.448 kb on + strand at 2735.449 kb on - strand at 2735.449 kb on - strand at 2735.575 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2735.610 kb on - strand at 2736.167 kb on + strand at 2736.169 kb on + strand at 2736.476 kb on - strand, within ECD_02621 at 2736.477 kb on + strand, within ECD_02621
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,733,094 - ECD_02619 0.27 -3.0 2,733,142 + ECD_02619 0.30 -0.2 2,733,195 + ECD_02619 0.35 +4.1 2,733,195 + ECD_02619 0.35 -2.2 2,733,196 - ECD_02619 0.35 -0.4 2,733,215 - ECD_02619 0.36 -1.7 2,733,275 - ECD_02619 0.41 -0.8 2,733,281 + ECD_02619 0.41 -3.1 2,733,281 + ECD_02619 0.41 -1.5 2,733,281 + ECD_02619 0.41 -2.3 2,733,281 + ECD_02619 0.41 -0.8 2,733,281 + ECD_02619 0.41 -1.8 2,733,282 - ECD_02619 0.41 -0.2 2,733,282 - ECD_02619 0.41 -0.4 2,733,282 - ECD_02619 0.41 -0.3 2,733,282 - ECD_02619 0.41 -1.9 2,733,282 - ECD_02619 0.41 +1.1 2,733,283 + ECD_02619 0.41 +4.5 2,733,294 - ECD_02619 0.42 -1.1 2,733,462 - ECD_02619 0.55 -0.7 2,733,462 - ECD_02619 0.55 -2.1 2,733,462 - ECD_02619 0.55 -2.0 2,733,489 - ECD_02619 0.58 -2.5 2,733,489 - ECD_02619 0.58 -0.0 2,733,489 - ECD_02619 0.58 +3.4 2,733,503 + ECD_02619 0.59 -0.3 2,733,503 + ECD_02619 0.59 -0.0 2,733,503 + ECD_02619 0.59 -2.0 2,733,504 - ECD_02619 0.59 -1.4 2,733,504 - ECD_02619 0.59 -0.8 2,733,530 + ECD_02619 0.61 -0.5 2,733,531 - ECD_02619 0.61 -2.6 2,733,555 + ECD_02619 0.63 +4.5 2,733,588 + ECD_02619 0.65 -0.4 2,733,588 + ECD_02619 0.65 -0.9 2,733,589 - ECD_02619 0.65 -0.2 2,733,599 + ECD_02619 0.66 -1.6 2,733,600 - ECD_02619 0.66 -0.8 2,733,600 - ECD_02619 0.66 +3.8 2,733,664 - ECD_02619 0.71 +0.6 2,733,688 + ECD_02619 0.73 -1.4 2,733,746 + ECD_02619 0.78 -2.1 2,733,746 + ECD_02619 0.78 -1.4 2,733,800 + ECD_02619 0.82 -0.3 2,733,800 + ECD_02619 0.82 +0.5 2,733,800 + ECD_02619 0.82 -1.3 2,733,801 - ECD_02619 0.82 +0.1 2,733,806 - ECD_02619 0.82 -0.8 2,733,820 - ECD_02619 0.83 -1.0 2,733,823 + ECD_02619 0.84 -1.0 2,733,824 - ECD_02619 0.84 -1.3 2,733,871 + ECD_02619 0.87 -0.5 2,733,872 - ECD_02619 0.88 -1.0 2,733,919 + -0.7 2,733,919 + +3.9 2,733,919 + -2.6 2,733,919 + -1.0 2,733,919 + -0.4 2,733,919 + -0.1 2,733,920 - -0.4 2,733,920 - -2.0 2,733,920 - -2.0 2,733,964 + -2.1 2,734,018 + -0.9 2,734,018 + -1.0 2,734,018 + -1.0 2,734,019 - -0.4 2,734,028 + -2.3 2,734,028 + -0.7 2,734,028 + -2.1 2,734,028 + -0.0 2,734,028 + -3.2 2,734,029 - -1.2 2,734,029 - +0.3 2,734,029 - +3.8 2,734,029 - +0.8 2,734,043 - -1.1 2,734,069 + -1.1 2,734,076 + +3.7 2,734,117 + -0.7 2,734,117 + -1.8 2,734,117 + -0.9 2,734,117 + -0.5 2,734,117 + -0.4 2,734,117 + +4.0 2,734,117 + -0.9 2,734,117 + -0.6 2,734,117 + +3.4 2,734,118 - -0.6 2,734,157 + +0.4 2,734,160 + -0.9 2,734,226 + ECD_02620 0.11 -2.5 2,734,226 + ECD_02620 0.11 -3.2 2,734,226 + ECD_02620 0.11 -0.4 2,734,226 + ECD_02620 0.11 -1.7 2,734,269 + ECD_02620 0.14 -1.5 2,734,269 + ECD_02620 0.14 -1.5 2,734,278 + ECD_02620 0.15 -0.5 2,734,278 + ECD_02620 0.15 -2.2 2,734,390 + ECD_02620 0.23 -1.0 2,734,401 + ECD_02620 0.23 -1.1 2,734,417 + ECD_02620 0.24 -1.4 2,734,417 + ECD_02620 0.24 -1.2 2,734,417 + ECD_02620 0.24 -0.6 2,734,417 + ECD_02620 0.24 -1.8 2,734,417 + ECD_02620 0.24 -0.1 2,734,418 - ECD_02620 0.24 -0.7 2,734,418 - ECD_02620 0.24 +0.5 2,734,418 - ECD_02620 0.24 +2.1 2,734,418 - ECD_02620 0.24 +0.7 2,734,418 - ECD_02620 0.24 +0.5 2,734,467 + ECD_02620 0.28 -1.0 2,734,468 - ECD_02620 0.28 -0.5 2,734,487 - ECD_02620 0.29 -0.8 2,734,487 - ECD_02620 0.29 -1.2 2,734,510 + ECD_02620 0.31 +0.8 2,734,510 + ECD_02620 0.31 -0.4 2,734,510 + ECD_02620 0.31 -0.4 2,734,510 + ECD_02620 0.31 -1.4 2,734,510 + ECD_02620 0.31 -1.9 2,734,512 + ECD_02620 0.31 -0.5 2,734,512 + ECD_02620 0.31 +4.1 2,734,512 + ECD_02620 0.31 +3.8 2,734,512 + ECD_02620 0.31 +0.1 2,734,551 + ECD_02620 0.33 -0.8 2,734,552 - ECD_02620 0.33 -1.7 2,734,557 + ECD_02620 0.34 +1.2 2,734,572 + ECD_02620 0.35 +0.7 2,734,573 - ECD_02620 0.35 -0.6 2,734,614 + ECD_02620 0.38 -1.0 2,734,691 + ECD_02620 0.43 -1.0 2,734,750 + ECD_02620 0.47 +3.3 2,734,750 + ECD_02620 0.47 -1.6 2,734,750 + ECD_02620 0.47 -1.6 2,734,750 + ECD_02620 0.47 -1.8 2,734,751 - ECD_02620 0.47 +4.5 2,734,751 - ECD_02620 0.47 -0.8 2,734,802 - ECD_02620 0.50 -0.8 2,734,802 - ECD_02620 0.50 -0.3 2,734,812 + ECD_02620 0.51 -0.9 2,734,812 + ECD_02620 0.51 -2.2 2,734,821 + ECD_02620 0.52 +0.3 2,734,822 - ECD_02620 0.52 +3.4 2,734,840 + ECD_02620 0.53 +3.7 2,734,841 - ECD_02620 0.53 +4.2 2,734,849 + ECD_02620 0.54 -3.0 2,734,911 - ECD_02620 0.58 -1.0 2,734,911 - ECD_02620 0.58 -2.7 2,734,911 - ECD_02620 0.58 -2.5 2,734,953 - ECD_02620 0.61 -1.8 2,734,989 + ECD_02620 0.63 -2.2 2,735,038 + ECD_02620 0.66 -1.2 2,735,080 + ECD_02620 0.69 -1.9 2,735,090 + ECD_02620 0.70 +2.0 2,735,090 + ECD_02620 0.70 -1.4 2,735,090 + ECD_02620 0.70 -0.9 2,735,090 + ECD_02620 0.70 +0.4 2,735,091 - ECD_02620 0.70 +4.3 2,735,091 - ECD_02620 0.70 +3.6 2,735,091 - ECD_02620 0.70 -2.3 2,735,091 - ECD_02620 0.70 -0.5 2,735,092 + ECD_02620 0.70 -0.2 2,735,093 - ECD_02620 0.70 -0.7 2,735,093 - ECD_02620 0.70 -1.5 2,735,138 - ECD_02620 0.73 -2.0 2,735,145 + ECD_02620 0.74 +4.4 2,735,145 + ECD_02620 0.74 +5.1 2,735,145 + ECD_02620 0.74 -0.6 2,735,301 + ECD_02620 0.84 -0.7 2,735,302 - ECD_02620 0.84 -0.2 2,735,370 + ECD_02620 0.89 -0.3 2,735,371 - ECD_02620 0.89 +3.3 2,735,371 - ECD_02620 0.89 -1.9 2,735,377 - ECD_02620 0.89 -0.7 2,735,404 + -1.1 2,735,448 + +0.3 2,735,448 + -1.7 2,735,448 + -1.5 2,735,448 + -1.3 2,735,448 + -2.5 2,735,449 - -2.2 2,735,449 - -1.0 2,735,575 - -0.9 2,735,610 - +0.2 2,735,610 - -2.1 2,735,610 - -0.0 2,735,610 - +3.6 2,736,167 + -0.6 2,736,169 + -0.5 2,736,476 - ECD_02621 0.36 -0.6 2,736,477 + ECD_02621 0.36 -0.6
Or see this region's nucleotide sequence