Strain Fitness in Escherichia coli BL21 around ECD_02618

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02617 and ECD_02618 are separated by 69 nucleotidesECD_02618 and ECD_02619 are separated by 318 nucleotides ECD_02617: ECD_02617 - putative FAD-linked oxidoreductase, at 2,730,125 to 2,731,579 _02617 ECD_02618: ECD_02618 - putative SDR family oxidoreductase, at 2,731,649 to 2,732,434 _02618 ECD_02619: ECD_02619 - putative MFS transporter, inner membrane protein, at 2,732,753 to 2,734,030 _02619 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2730.790 kb on - strand, within ECD_02617at 2730.790 kb on - strand, within ECD_02617at 2730.790 kb on - strand, within ECD_02617at 2730.790 kb on - strand, within ECD_02617at 2730.872 kb on - strand, within ECD_02617at 2730.872 kb on - strand, within ECD_02617at 2730.872 kb on - strand, within ECD_02617at 2730.880 kb on - strand, within ECD_02617at 2730.880 kb on - strand, within ECD_02617at 2730.936 kb on + strand, within ECD_02617at 2731.061 kb on - strand, within ECD_02617at 2731.061 kb on - strand, within ECD_02617at 2731.061 kb on - strand, within ECD_02617at 2731.061 kb on - strand, within ECD_02617at 2731.100 kb on - strand, within ECD_02617at 2731.244 kb on - strand, within ECD_02617at 2731.250 kb on - strand, within ECD_02617at 2731.250 kb on - strand, within ECD_02617at 2731.252 kb on + strand, within ECD_02617at 2731.253 kb on - strand, within ECD_02617at 2731.253 kb on - strand, within ECD_02617at 2731.298 kb on + strand, within ECD_02617at 2731.299 kb on - strand, within ECD_02617at 2731.392 kb on - strand, within ECD_02617at 2731.392 kb on - strand, within ECD_02617at 2731.444 kb on - strandat 2731.444 kb on - strandat 2731.484 kb on - strandat 2731.572 kb on - strandat 2731.580 kb on - strandat 2731.962 kb on - strand, within ECD_02618at 2732.034 kb on + strand, within ECD_02618at 2732.039 kb on + strand, within ECD_02618at 2732.120 kb on - strand, within ECD_02618at 2732.290 kb on + strand, within ECD_02618at 2732.434 kb on + strandat 2732.434 kb on + strandat 2732.435 kb on - strandat 2732.438 kb on + strandat 2732.474 kb on + strandat 2732.499 kb on - strandat 2732.511 kb on - strandat 2732.541 kb on + strandat 2732.654 kb on - strandat 2732.835 kb on + strandat 2733.035 kb on + strand, within ECD_02619at 2733.094 kb on - strand, within ECD_02619at 2733.142 kb on + strand, within ECD_02619at 2733.195 kb on + strand, within ECD_02619at 2733.195 kb on + strand, within ECD_02619at 2733.196 kb on - strand, within ECD_02619at 2733.215 kb on - strand, within ECD_02619at 2733.275 kb on - strand, within ECD_02619at 2733.281 kb on + strand, within ECD_02619at 2733.281 kb on + strand, within ECD_02619at 2733.281 kb on + strand, within ECD_02619at 2733.281 kb on + strand, within ECD_02619at 2733.281 kb on + strand, within ECD_02619at 2733.282 kb on - strand, within ECD_02619at 2733.282 kb on - strand, within ECD_02619at 2733.282 kb on - strand, within ECD_02619at 2733.282 kb on - strand, within ECD_02619at 2733.282 kb on - strand, within ECD_02619at 2733.283 kb on + strand, within ECD_02619at 2733.294 kb on - strand, within ECD_02619

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,730,790 - ECD_02617 0.46 -0.9
2,730,790 - ECD_02617 0.46 -2.5
2,730,790 - ECD_02617 0.46 +0.6
2,730,790 - ECD_02617 0.46 -0.3
2,730,872 - ECD_02617 0.51 -0.5
2,730,872 - ECD_02617 0.51 -0.2
2,730,872 - ECD_02617 0.51 -1.5
2,730,880 - ECD_02617 0.52 +2.4
2,730,880 - ECD_02617 0.52 +4.3
2,730,936 + ECD_02617 0.56 -1.4
2,731,061 - ECD_02617 0.64 -2.1
2,731,061 - ECD_02617 0.64 -0.5
2,731,061 - ECD_02617 0.64 +0.3
2,731,061 - ECD_02617 0.64 +4.2
2,731,100 - ECD_02617 0.67 -1.6
2,731,244 - ECD_02617 0.77 -1.6
2,731,250 - ECD_02617 0.77 -1.2
2,731,250 - ECD_02617 0.77 -1.4
2,731,252 + ECD_02617 0.77 +4.7
2,731,253 - ECD_02617 0.78 -1.6
2,731,253 - ECD_02617 0.78 -0.6
2,731,298 + ECD_02617 0.81 -0.8
2,731,299 - ECD_02617 0.81 +4.0
2,731,392 - ECD_02617 0.87 -1.2
2,731,392 - ECD_02617 0.87 -1.5
2,731,444 - +3.2
2,731,444 - -2.9
2,731,484 - -1.1
2,731,572 - -0.8
2,731,580 - +3.8
2,731,962 - ECD_02618 0.40 -1.0
2,732,034 + ECD_02618 0.49 -0.3
2,732,039 + ECD_02618 0.50 -0.1
2,732,120 - ECD_02618 0.60 -1.8
2,732,290 + ECD_02618 0.82 -1.3
2,732,434 + -0.8
2,732,434 + -1.9
2,732,435 - -2.4
2,732,438 + -1.5
2,732,474 + -0.9
2,732,499 - +0.6
2,732,511 - -1.0
2,732,541 + -1.0
2,732,654 - -0.6
2,732,835 + -1.5
2,733,035 + ECD_02619 0.22 -0.3
2,733,094 - ECD_02619 0.27 -3.0
2,733,142 + ECD_02619 0.30 -0.2
2,733,195 + ECD_02619 0.35 +4.1
2,733,195 + ECD_02619 0.35 -2.2
2,733,196 - ECD_02619 0.35 -0.4
2,733,215 - ECD_02619 0.36 -1.7
2,733,275 - ECD_02619 0.41 -0.8
2,733,281 + ECD_02619 0.41 -3.1
2,733,281 + ECD_02619 0.41 -1.5
2,733,281 + ECD_02619 0.41 -2.3
2,733,281 + ECD_02619 0.41 -0.8
2,733,281 + ECD_02619 0.41 -1.8
2,733,282 - ECD_02619 0.41 -0.2
2,733,282 - ECD_02619 0.41 -0.4
2,733,282 - ECD_02619 0.41 -0.3
2,733,282 - ECD_02619 0.41 -1.9
2,733,282 - ECD_02619 0.41 +1.1
2,733,283 + ECD_02619 0.41 +4.5
2,733,294 - ECD_02619 0.42 -1.1

Or see this region's nucleotide sequence