Strain Fitness in Escherichia coli BL21 around ECD_02438

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02437 and ECD_02438 are separated by 65 nucleotidesECD_02438 and ECD_02439 are separated by 24 nucleotides ECD_02437: ECD_02437 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 2,540,505 to 2,541,566 _02437 ECD_02438: ECD_02438 - putative sugar ABC transporter permease, at 2,541,632 to 2,542,630 _02438 ECD_02439: ECD_02439 - putative sugar ABC transporter ATPase, at 2,542,655 to 2,544,166 _02439 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2540.752 kb on + strand, within ECD_02437at 2540.753 kb on - strand, within ECD_02437at 2540.949 kb on - strand, within ECD_02437at 2541.076 kb on + strand, within ECD_02437at 2541.076 kb on + strand, within ECD_02437at 2541.225 kb on - strand, within ECD_02437at 2541.225 kb on - strand, within ECD_02437at 2541.234 kb on - strand, within ECD_02437at 2541.234 kb on - strand, within ECD_02437at 2541.369 kb on - strand, within ECD_02437at 2541.425 kb on - strand, within ECD_02437at 2541.425 kb on - strand, within ECD_02437at 2541.428 kb on + strand, within ECD_02437at 2541.428 kb on + strand, within ECD_02437at 2541.428 kb on + strand, within ECD_02437at 2541.428 kb on + strand, within ECD_02437at 2541.428 kb on + strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.429 kb on - strand, within ECD_02437at 2541.430 kb on + strand, within ECD_02437at 2541.431 kb on - strand, within ECD_02437at 2541.431 kb on - strand, within ECD_02437at 2541.478 kb on - strandat 2541.544 kb on + strandat 2541.585 kb on - strandat 2541.708 kb on - strandat 2541.730 kb on + strandat 2541.731 kb on - strandat 2541.767 kb on - strand, within ECD_02438at 2542.238 kb on + strand, within ECD_02438at 2542.408 kb on + strand, within ECD_02438at 2542.559 kb on - strandat 2542.614 kb on - strandat 2542.739 kb on + strandat 2542.740 kb on - strandat 2543.145 kb on + strand, within ECD_02439at 2543.226 kb on + strand, within ECD_02439at 2543.313 kb on - strand, within ECD_02439at 2543.318 kb on - strand, within ECD_02439at 2543.326 kb on + strand, within ECD_02439at 2543.345 kb on - strand, within ECD_02439at 2543.411 kb on - strand, within ECD_02439at 2543.446 kb on + strand, within ECD_02439at 2543.447 kb on - strand, within ECD_02439at 2543.556 kb on + strand, within ECD_02439

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,540,752 + ECD_02437 0.23 +0.3
2,540,753 - ECD_02437 0.23 +0.3
2,540,949 - ECD_02437 0.42 -0.1
2,541,076 + ECD_02437 0.54 +0.4
2,541,076 + ECD_02437 0.54 -0.3
2,541,225 - ECD_02437 0.68 -0.1
2,541,225 - ECD_02437 0.68 +0.4
2,541,234 - ECD_02437 0.69 -1.6
2,541,234 - ECD_02437 0.69 +1.1
2,541,369 - ECD_02437 0.81 -1.6
2,541,425 - ECD_02437 0.87 +0.6
2,541,425 - ECD_02437 0.87 -0.2
2,541,428 + ECD_02437 0.87 -1.2
2,541,428 + ECD_02437 0.87 +2.0
2,541,428 + ECD_02437 0.87 +0.5
2,541,428 + ECD_02437 0.87 +0.8
2,541,428 + ECD_02437 0.87 -0.1
2,541,429 - ECD_02437 0.87 +1.2
2,541,429 - ECD_02437 0.87 +1.5
2,541,429 - ECD_02437 0.87 +0.5
2,541,429 - ECD_02437 0.87 +2.8
2,541,429 - ECD_02437 0.87 -0.4
2,541,429 - ECD_02437 0.87 -0.5
2,541,429 - ECD_02437 0.87 +1.0
2,541,429 - ECD_02437 0.87 -0.2
2,541,430 + ECD_02437 0.87 +0.9
2,541,431 - ECD_02437 0.87 -2.1
2,541,431 - ECD_02437 0.87 -0.1
2,541,478 - +5.4
2,541,544 + -0.3
2,541,585 - -2.0
2,541,708 - +0.9
2,541,730 + -0.1
2,541,731 - -0.1
2,541,767 - ECD_02438 0.14 +1.3
2,542,238 + ECD_02438 0.61 -0.5
2,542,408 + ECD_02438 0.78 -2.3
2,542,559 - -0.9
2,542,614 - -0.9
2,542,739 + +0.5
2,542,740 - -0.5
2,543,145 + ECD_02439 0.32 +0.3
2,543,226 + ECD_02439 0.38 +0.9
2,543,313 - ECD_02439 0.44 -1.6
2,543,318 - ECD_02439 0.44 +0.3
2,543,326 + ECD_02439 0.44 -0.3
2,543,345 - ECD_02439 0.46 -0.5
2,543,411 - ECD_02439 0.50 -0.5
2,543,446 + ECD_02439 0.52 +0.8
2,543,447 - ECD_02439 0.52 +0.4
2,543,556 + ECD_02439 0.60 +0.3

Or see this region's nucleotide sequence