Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02412 and ECD_02413 are separated by 206 nucleotides ECD_02413 and ECD_04290 are separated by 83 nucleotides ECD_04290 and ECD_04289 overlap by 4 nucleotides
ECD_02412: ECD_02412 - bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein, at 2,511,806 to 2,516,767
_02412
ECD_02413: ECD_02413 - 3-mercaptopyruvate sulfurtransferase, at 2,516,974 to 2,517,819
_02413
ECD_04290: ECD_04290 - transposase, at 2,517,903 to 2,518,424
_04290
ECD_04289: ECD_04289 - transposase, at 2,518,421 to 2,519,260
_04289
Position (kb)
2516
2517
2518 Strain fitness (log2 ratio)
-1
0
1 at 2516.189 kb on - strand, within ECD_02412 at 2516.191 kb on + strand, within ECD_02412 at 2516.191 kb on + strand, within ECD_02412 at 2516.292 kb on - strand at 2516.391 kb on - strand at 2516.405 kb on - strand at 2516.410 kb on + strand at 2516.656 kb on + strand at 2516.735 kb on + strand at 2516.735 kb on + strand at 2516.736 kb on - strand at 2516.808 kb on - strand at 2516.828 kb on + strand at 2516.837 kb on + strand at 2516.837 kb on + strand at 2516.856 kb on + strand at 2516.857 kb on - strand at 2516.857 kb on - strand at 2516.928 kb on - strand at 2516.973 kb on + strand at 2517.098 kb on - strand, within ECD_02413 at 2517.112 kb on - strand, within ECD_02413 at 2517.261 kb on + strand, within ECD_02413 at 2517.261 kb on + strand, within ECD_02413 at 2517.386 kb on + strand, within ECD_02413 at 2517.420 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.452 kb on + strand, within ECD_02413 at 2517.545 kb on + strand, within ECD_02413 at 2517.661 kb on + strand, within ECD_02413
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,516,189 - ECD_02412 0.88 -0.7 2,516,191 + ECD_02412 0.88 -0.3 2,516,191 + ECD_02412 0.88 -0.2 2,516,292 - -0.5 2,516,391 - -0.0 2,516,405 - +0.0 2,516,410 + -1.3 2,516,656 + -0.9 2,516,735 + +0.3 2,516,735 + -0.4 2,516,736 - +1.6 2,516,808 - +1.2 2,516,828 + -0.2 2,516,837 + -1.2 2,516,837 + +1.2 2,516,856 + +0.2 2,516,857 - +0.2 2,516,857 - -1.5 2,516,928 - -0.8 2,516,973 + -0.4 2,517,098 - ECD_02413 0.15 -0.6 2,517,112 - ECD_02413 0.16 +0.6 2,517,261 + ECD_02413 0.34 +0.5 2,517,261 + ECD_02413 0.34 -1.4 2,517,386 + ECD_02413 0.49 +0.2 2,517,420 + ECD_02413 0.53 +0.6 2,517,452 + ECD_02413 0.57 -0.9 2,517,452 + ECD_02413 0.57 -1.6 2,517,452 + ECD_02413 0.57 -1.4 2,517,545 + ECD_02413 0.67 +0.7 2,517,661 + ECD_02413 0.81 +0.3
Or see this region's nucleotide sequence