Strain Fitness in Escherichia coli BL21 around ECD_02407

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02406 and ECD_02407 are separated by 110 nucleotidesECD_02407 and ECD_02408 are separated by 26 nucleotides ECD_02406: ECD_02406 - histidyl tRNA synthetase, at 2,503,781 to 2,505,055 _02406 ECD_02407: ECD_02407 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 2,505,166 to 2,506,284 _02407 ECD_02408: ECD_02408 - MreB assembly cytoskeletal protein, at 2,506,311 to 2,507,324 _02408 Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -1 0 1 2at 2505.077 kb on - strandat 2505.165 kb on - strandat 2505.168 kb on - strandat 2506.362 kb on - strandat 2506.362 kb on - strandat 2506.362 kb on - strandat 2506.547 kb on + strand, within ECD_02408at 2506.738 kb on - strand, within ECD_02408at 2506.811 kb on + strand, within ECD_02408at 2506.811 kb on + strand, within ECD_02408at 2506.812 kb on - strand, within ECD_02408at 2506.812 kb on - strand, within ECD_02408at 2506.823 kb on + strand, within ECD_02408at 2506.824 kb on - strand, within ECD_02408at 2506.828 kb on - strand, within ECD_02408at 2506.854 kb on - strand, within ECD_02408at 2506.857 kb on - strand, within ECD_02408at 2506.889 kb on + strand, within ECD_02408at 2506.889 kb on + strand, within ECD_02408

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,505,077 - +0.3
2,505,165 - +0.3
2,505,168 - -1.0
2,506,362 - +0.5
2,506,362 - +0.2
2,506,362 - +0.3
2,506,547 + ECD_02408 0.23 +1.4
2,506,738 - ECD_02408 0.42 -0.2
2,506,811 + ECD_02408 0.49 +2.7
2,506,811 + ECD_02408 0.49 +2.1
2,506,812 - ECD_02408 0.49 -0.6
2,506,812 - ECD_02408 0.49 +0.5
2,506,823 + ECD_02408 0.50 +1.7
2,506,824 - ECD_02408 0.51 +0.2
2,506,828 - ECD_02408 0.51 -0.4
2,506,854 - ECD_02408 0.54 +0.1
2,506,857 - ECD_02408 0.54 +0.1
2,506,889 + ECD_02408 0.57 +2.0
2,506,889 + ECD_02408 0.57 +0.7

Or see this region's nucleotide sequence