Strain Fitness in Escherichia coli BL21 around ECD_02387

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02386 and ECD_02387 are separated by 20 nucleotidesECD_02387 and ECD_02388 are separated by 137 nucleotidesECD_02388 and ECD_02389 are separated by 49 nucleotides ECD_02386: ECD_02386 - OM protein maintenance and assembly metalloprotease and chaperone, periplasmic, at 2,480,575 to 2,482,038 _02386 ECD_02387: ECD_02387 - putative oxidoreductase, at 2,482,059 to 2,482,418 _02387 ECD_02388: ECD_02388 - ATPase regulatory factor involved in DnaA inactivation, at 2,482,556 to 2,483,302 _02388 ECD_02389: ECD_02389 - uracil permease, at 2,483,352 to 2,484,641 _02389 Position (kb) 2482 2483Strain fitness (log2 ratio) -2 -1 0 1at 2481.427 kb on + strand, within ECD_02386at 2481.927 kb on + strandat 2482.017 kb on + strandat 2482.036 kb on + strandat 2482.037 kb on - strandat 2482.156 kb on + strand, within ECD_02387at 2482.223 kb on + strand, within ECD_02387at 2482.260 kb on + strand, within ECD_02387at 2482.263 kb on - strand, within ECD_02387at 2482.489 kb on + strandat 2482.490 kb on - strandat 2482.493 kb on - strandat 2482.499 kb on + strandat 2482.554 kb on - strandat 2483.353 kb on + strandat 2483.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,481,427 + ECD_02386 0.58 -0.2
2,481,927 + +1.7
2,482,017 + -0.3
2,482,036 + +1.0
2,482,037 - -2.1
2,482,156 + ECD_02387 0.27 -0.9
2,482,223 + ECD_02387 0.46 -0.9
2,482,260 + ECD_02387 0.56 -1.3
2,482,263 - ECD_02387 0.57 +0.6
2,482,489 + -0.4
2,482,490 - -1.1
2,482,493 - -0.2
2,482,499 + +1.4
2,482,554 - +1.3
2,483,353 + +1.6
2,483,364 + -0.7

Or see this region's nucleotide sequence