Strain Fitness in Escherichia coli BL21 around ECD_02359

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02357 and ECD_02358 are separated by 125 nucleotidesECD_02358 and ECD_02359 are separated by 67 nucleotidesECD_02359 and ECD_02360 are separated by 205 nucleotides ECD_02357: ECD_02357 - DUF1176 family protein, at 2,446,223 to 2,447,266 _02357 ECD_02358: ECD_02358 - GDP-mannose pyrophosphatase, at 2,447,392 to 2,447,967 _02358 ECD_02359: ECD_02359 - putative oxidoreductase, FeS binding subunit/NAD/FAD-binding subunit, at 2,448,035 to 2,450,014 _02359 ECD_02360: ECD_02360 - sensory histidine kinase in two-component regulatory system with NarP, at 2,450,220 to 2,451,920 _02360 Position (kb) 2448 2449 2450 2451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2447.060 kb on - strand, within ECD_02357at 2447.063 kb on + strand, within ECD_02357at 2447.119 kb on + strand, within ECD_02357at 2447.120 kb on - strand, within ECD_02357at 2447.120 kb on - strand, within ECD_02357at 2447.161 kb on + strand, within ECD_02357at 2447.161 kb on + strand, within ECD_02357at 2447.162 kb on - strandat 2447.378 kb on - strandat 2447.562 kb on - strand, within ECD_02358at 2447.610 kb on + strand, within ECD_02358at 2447.611 kb on - strand, within ECD_02358at 2447.612 kb on + strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.810 kb on + strand, within ECD_02358at 2447.844 kb on - strand, within ECD_02358at 2447.856 kb on + strand, within ECD_02358at 2447.898 kb on + strand, within ECD_02358at 2447.898 kb on + strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.918 kb on + strandat 2447.997 kb on - strandat 2448.033 kb on + strandat 2448.596 kb on + strand, within ECD_02359at 2448.699 kb on + strand, within ECD_02359at 2448.699 kb on + strand, within ECD_02359at 2448.747 kb on + strand, within ECD_02359at 2448.748 kb on - strand, within ECD_02359at 2448.748 kb on - strand, within ECD_02359at 2448.777 kb on + strand, within ECD_02359at 2448.778 kb on - strand, within ECD_02359at 2448.778 kb on - strand, within ECD_02359at 2448.948 kb on + strand, within ECD_02359at 2449.098 kb on + strand, within ECD_02359at 2449.117 kb on + strand, within ECD_02359at 2449.147 kb on + strand, within ECD_02359at 2449.148 kb on - strand, within ECD_02359at 2449.148 kb on - strand, within ECD_02359at 2449.278 kb on - strand, within ECD_02359at 2449.278 kb on - strand, within ECD_02359at 2449.278 kb on - strand, within ECD_02359at 2449.279 kb on + strand, within ECD_02359at 2449.279 kb on + strand, within ECD_02359at 2449.279 kb on + strand, within ECD_02359at 2449.279 kb on + strand, within ECD_02359at 2449.330 kb on + strand, within ECD_02359at 2449.331 kb on - strand, within ECD_02359at 2449.380 kb on + strand, within ECD_02359at 2449.381 kb on - strand, within ECD_02359at 2449.745 kb on - strand, within ECD_02359at 2449.754 kb on - strand, within ECD_02359at 2449.754 kb on - strand, within ECD_02359at 2449.754 kb on - strand, within ECD_02359at 2449.862 kb on - strandat 2449.862 kb on - strandat 2449.889 kb on - strandat 2450.079 kb on - strandat 2450.112 kb on + strandat 2450.113 kb on - strandat 2450.116 kb on + strandat 2450.130 kb on + strandat 2450.194 kb on - strandat 2450.352 kb on - strandat 2450.464 kb on + strand, within ECD_02360at 2450.487 kb on + strand, within ECD_02360at 2450.488 kb on - strand, within ECD_02360at 2450.488 kb on - strand, within ECD_02360at 2450.592 kb on - strand, within ECD_02360at 2450.595 kb on - strand, within ECD_02360at 2450.598 kb on - strand, within ECD_02360at 2450.602 kb on - strand, within ECD_02360at 2450.602 kb on - strand, within ECD_02360at 2450.614 kb on + strand, within ECD_02360at 2450.889 kb on - strand, within ECD_02360at 2450.889 kb on - strand, within ECD_02360at 2450.970 kb on + strand, within ECD_02360at 2450.971 kb on - strand, within ECD_02360

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,447,060 - ECD_02357 0.80 +0.2
2,447,063 + ECD_02357 0.80 +2.6
2,447,119 + ECD_02357 0.86 -0.3
2,447,120 - ECD_02357 0.86 +0.0
2,447,120 - ECD_02357 0.86 -0.1
2,447,161 + ECD_02357 0.90 -1.1
2,447,161 + ECD_02357 0.90 +1.0
2,447,162 - +0.2
2,447,378 - +0.5
2,447,562 - ECD_02358 0.30 -0.5
2,447,610 + ECD_02358 0.38 +0.5
2,447,611 - ECD_02358 0.38 +0.7
2,447,612 + ECD_02358 0.38 +0.3
2,447,613 - ECD_02358 0.38 +0.6
2,447,613 - ECD_02358 0.38 -0.6
2,447,613 - ECD_02358 0.38 -0.1
2,447,613 - ECD_02358 0.38 +0.3
2,447,810 + ECD_02358 0.73 +1.0
2,447,844 - ECD_02358 0.78 -0.4
2,447,856 + ECD_02358 0.81 -0.5
2,447,898 + ECD_02358 0.88 +0.2
2,447,898 + ECD_02358 0.88 -0.1
2,447,899 - ECD_02358 0.88 -0.5
2,447,899 - ECD_02358 0.88 -0.2
2,447,899 - ECD_02358 0.88 +0.1
2,447,899 - ECD_02358 0.88 -0.1
2,447,899 - ECD_02358 0.88 -0.2
2,447,918 + -0.1
2,447,997 - +0.8
2,448,033 + -0.2
2,448,596 + ECD_02359 0.28 -0.6
2,448,699 + ECD_02359 0.34 -0.6
2,448,699 + ECD_02359 0.34 -0.2
2,448,747 + ECD_02359 0.36 -0.5
2,448,748 - ECD_02359 0.36 -1.0
2,448,748 - ECD_02359 0.36 +0.2
2,448,777 + ECD_02359 0.37 +0.7
2,448,778 - ECD_02359 0.38 -0.5
2,448,778 - ECD_02359 0.38 +0.5
2,448,948 + ECD_02359 0.46 +1.8
2,449,098 + ECD_02359 0.54 +0.5
2,449,117 + ECD_02359 0.55 +2.1
2,449,147 + ECD_02359 0.56 -1.4
2,449,148 - ECD_02359 0.56 -0.8
2,449,148 - ECD_02359 0.56 +0.0
2,449,278 - ECD_02359 0.63 -0.7
2,449,278 - ECD_02359 0.63 +0.0
2,449,278 - ECD_02359 0.63 -1.4
2,449,279 + ECD_02359 0.63 +0.8
2,449,279 + ECD_02359 0.63 -0.8
2,449,279 + ECD_02359 0.63 +1.3
2,449,279 + ECD_02359 0.63 -1.8
2,449,330 + ECD_02359 0.65 +0.1
2,449,331 - ECD_02359 0.65 +1.3
2,449,380 + ECD_02359 0.68 -0.1
2,449,381 - ECD_02359 0.68 -0.8
2,449,745 - ECD_02359 0.86 -0.1
2,449,754 - ECD_02359 0.87 -0.1
2,449,754 - ECD_02359 0.87 +0.8
2,449,754 - ECD_02359 0.87 +0.0
2,449,862 - +0.7
2,449,862 - -0.7
2,449,889 - +0.6
2,450,079 - +0.2
2,450,112 + +0.1
2,450,113 - +0.5
2,450,116 + +0.3
2,450,130 + -0.2
2,450,194 - +0.7
2,450,352 - -0.5
2,450,464 + ECD_02360 0.14 +0.1
2,450,487 + ECD_02360 0.16 +0.1
2,450,488 - ECD_02360 0.16 +0.8
2,450,488 - ECD_02360 0.16 +0.4
2,450,592 - ECD_02360 0.22 -0.7
2,450,595 - ECD_02360 0.22 -0.3
2,450,598 - ECD_02360 0.22 -0.5
2,450,602 - ECD_02360 0.22 -0.2
2,450,602 - ECD_02360 0.22 +1.2
2,450,614 + ECD_02360 0.23 +0.5
2,450,889 - ECD_02360 0.39 +2.9
2,450,889 - ECD_02360 0.39 +1.1
2,450,970 + ECD_02360 0.44 +1.1
2,450,971 - ECD_02360 0.44 -0.9

Or see this region's nucleotide sequence