Strain Fitness in Escherichia coli BL21 around ECD_02255

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02254 and ECD_02255 are separated by 34 nucleotidesECD_02255 and ECD_02256 are separated by 165 nucleotidesECD_02256 and ECD_02257 are separated by 125 nucleotides ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726 _02254 ECD_02255: ECD_02255 - N5-glutamine methyltransferase, at 2,334,761 to 2,335,693 _02255 ECD_02256: ECD_02256 - putative DNA endonuclease, at 2,335,859 to 2,336,410 _02256 ECD_02257: ECD_02257 - DUF2544 family putative outer membrane protein, at 2,336,536 to 2,337,333 _02257 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2333.818 kb on - strand, within ECD_02254at 2334.401 kb on + strand, within ECD_02254at 2334.402 kb on - strand, within ECD_02254at 2334.433 kb on - strand, within ECD_02254at 2334.821 kb on - strandat 2334.887 kb on - strand, within ECD_02255at 2334.894 kb on - strand, within ECD_02255at 2334.894 kb on - strand, within ECD_02255at 2335.027 kb on - strand, within ECD_02255at 2335.049 kb on - strand, within ECD_02255at 2335.279 kb on + strand, within ECD_02255at 2335.419 kb on + strand, within ECD_02255at 2335.420 kb on - strand, within ECD_02255at 2335.557 kb on - strand, within ECD_02255at 2335.665 kb on - strandat 2335.755 kb on - strandat 2335.789 kb on + strandat 2335.856 kb on + strandat 2335.934 kb on - strand, within ECD_02256at 2336.078 kb on + strand, within ECD_02256at 2336.078 kb on + strand, within ECD_02256at 2336.078 kb on + strand, within ECD_02256at 2336.469 kb on - strandat 2336.474 kb on + strandat 2336.593 kb on - strandat 2336.603 kb on - strandat 2336.614 kb on + strandat 2336.615 kb on - strandat 2336.671 kb on - strand, within ECD_02257

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,333,818 - ECD_02254 0.16 +1.0
2,334,401 + ECD_02254 0.70 +2.3
2,334,402 - ECD_02254 0.70 +2.0
2,334,433 - ECD_02254 0.73 +2.8
2,334,821 - +1.6
2,334,887 - ECD_02255 0.14 +2.2
2,334,894 - ECD_02255 0.14 +2.3
2,334,894 - ECD_02255 0.14 +2.0
2,335,027 - ECD_02255 0.29 +2.4
2,335,049 - ECD_02255 0.31 +3.1
2,335,279 + ECD_02255 0.56 +2.5
2,335,419 + ECD_02255 0.71 +3.3
2,335,420 - ECD_02255 0.71 +2.0
2,335,557 - ECD_02255 0.85 +2.6
2,335,665 - +1.2
2,335,755 - +0.1
2,335,789 + +0.5
2,335,856 + -0.1
2,335,934 - ECD_02256 0.14 +0.3
2,336,078 + ECD_02256 0.40 +2.2
2,336,078 + ECD_02256 0.40 -0.3
2,336,078 + ECD_02256 0.40 -1.0
2,336,469 - +0.5
2,336,474 + -0.9
2,336,593 - -0.6
2,336,603 - +0.2
2,336,614 + -2.0
2,336,615 - -1.2
2,336,671 - ECD_02257 0.17 -0.1

Or see this region's nucleotide sequence