Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02246 and ECD_02247 overlap by 4 nucleotides ECD_02247 and ECD_02248 are separated by 264 nucleotides
ECD_02246: ECD_02246 - putative flagella assembly protein, at 2,325,203 to 2,326,198
_02246
ECD_02247: ECD_02247 - putative arabinose efflux transporter, at 2,326,195 to 2,327,373
_02247
ECD_02248: ECD_02248 - 3-oxoacyl-[acyl-carrier-protein] synthase I, at 2,327,638 to 2,328,858
_02248
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2325.197 kb on + strand at 2325.197 kb on + strand at 2325.197 kb on + strand at 2325.198 kb on - strand at 2325.207 kb on + strand at 2325.304 kb on + strand, within ECD_02246 at 2325.446 kb on - strand, within ECD_02246 at 2325.519 kb on - strand, within ECD_02246 at 2325.557 kb on + strand, within ECD_02246 at 2325.612 kb on + strand, within ECD_02246 at 2325.873 kb on + strand, within ECD_02246 at 2325.931 kb on - strand, within ECD_02246 at 2325.963 kb on - strand, within ECD_02246 at 2325.963 kb on - strand, within ECD_02246 at 2325.965 kb on - strand, within ECD_02246 at 2325.965 kb on - strand, within ECD_02246 at 2326.040 kb on + strand, within ECD_02246 at 2326.091 kb on - strand, within ECD_02246 at 2326.216 kb on + strand at 2326.228 kb on - strand at 2326.228 kb on - strand at 2326.420 kb on - strand, within ECD_02247 at 2326.694 kb on - strand, within ECD_02247 at 2326.817 kb on - strand, within ECD_02247 at 2326.817 kb on - strand, within ECD_02247 at 2326.858 kb on - strand, within ECD_02247 at 2327.107 kb on + strand, within ECD_02247 at 2327.107 kb on + strand, within ECD_02247 at 2327.108 kb on - strand, within ECD_02247 at 2327.291 kb on + strand at 2327.291 kb on + strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.408 kb on - strand at 2327.630 kb on - strand at 2327.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,325,197 + -0.7 2,325,197 + +0.6 2,325,197 + +1.3 2,325,198 - -0.0 2,325,207 + +0.0 2,325,304 + ECD_02246 0.10 +2.5 2,325,446 - ECD_02246 0.24 +0.9 2,325,519 - ECD_02246 0.32 +1.7 2,325,557 + ECD_02246 0.36 +1.9 2,325,612 + ECD_02246 0.41 +0.2 2,325,873 + ECD_02246 0.67 +0.2 2,325,931 - ECD_02246 0.73 +1.4 2,325,963 - ECD_02246 0.76 +1.0 2,325,963 - ECD_02246 0.76 +0.3 2,325,965 - ECD_02246 0.77 +0.4 2,325,965 - ECD_02246 0.77 +2.6 2,326,040 + ECD_02246 0.84 +0.2 2,326,091 - ECD_02246 0.89 +1.1 2,326,216 + +1.6 2,326,228 - +0.5 2,326,228 - -0.0 2,326,420 - ECD_02247 0.19 +0.5 2,326,694 - ECD_02247 0.42 -0.5 2,326,817 - ECD_02247 0.53 +0.2 2,326,817 - ECD_02247 0.53 -1.8 2,326,858 - ECD_02247 0.56 -0.6 2,327,107 + ECD_02247 0.77 -1.5 2,327,107 + ECD_02247 0.77 -0.4 2,327,108 - ECD_02247 0.77 +0.6 2,327,291 + -0.1 2,327,291 + -0.0 2,327,292 - +1.1 2,327,292 - +0.1 2,327,292 - +0.4 2,327,292 - -0.5 2,327,408 - -1.8 2,327,630 - -0.7 2,327,640 - +0.2
Or see this region's nucleotide sequence