Strain Fitness in Escherichia coli BL21 around ECD_02247

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02246 and ECD_02247 overlap by 4 nucleotidesECD_02247 and ECD_02248 are separated by 264 nucleotides ECD_02246: ECD_02246 - putative flagella assembly protein, at 2,325,203 to 2,326,198 _02246 ECD_02247: ECD_02247 - putative arabinose efflux transporter, at 2,326,195 to 2,327,373 _02247 ECD_02248: ECD_02248 - 3-oxoacyl-[acyl-carrier-protein] synthase I, at 2,327,638 to 2,328,858 _02248 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -2 -1 0 1 2at 2325.197 kb on + strandat 2325.197 kb on + strandat 2325.197 kb on + strandat 2325.198 kb on - strandat 2325.207 kb on + strandat 2325.304 kb on + strand, within ECD_02246at 2325.446 kb on - strand, within ECD_02246at 2325.519 kb on - strand, within ECD_02246at 2325.557 kb on + strand, within ECD_02246at 2325.612 kb on + strand, within ECD_02246at 2325.873 kb on + strand, within ECD_02246at 2325.931 kb on - strand, within ECD_02246at 2325.963 kb on - strand, within ECD_02246at 2325.963 kb on - strand, within ECD_02246at 2325.965 kb on - strand, within ECD_02246at 2325.965 kb on - strand, within ECD_02246at 2326.040 kb on + strand, within ECD_02246at 2326.091 kb on - strand, within ECD_02246at 2326.216 kb on + strandat 2326.228 kb on - strandat 2326.228 kb on - strandat 2326.420 kb on - strand, within ECD_02247at 2326.694 kb on - strand, within ECD_02247at 2326.817 kb on - strand, within ECD_02247at 2326.817 kb on - strand, within ECD_02247at 2326.858 kb on - strand, within ECD_02247at 2327.107 kb on + strand, within ECD_02247at 2327.107 kb on + strand, within ECD_02247at 2327.108 kb on - strand, within ECD_02247at 2327.291 kb on + strandat 2327.291 kb on + strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.292 kb on - strandat 2327.408 kb on - strandat 2327.630 kb on - strandat 2327.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
2,325,197 + -0.7
2,325,197 + +0.6
2,325,197 + +1.3
2,325,198 - -0.0
2,325,207 + +0.0
2,325,304 + ECD_02246 0.10 +2.5
2,325,446 - ECD_02246 0.24 +0.9
2,325,519 - ECD_02246 0.32 +1.7
2,325,557 + ECD_02246 0.36 +1.9
2,325,612 + ECD_02246 0.41 +0.2
2,325,873 + ECD_02246 0.67 +0.2
2,325,931 - ECD_02246 0.73 +1.4
2,325,963 - ECD_02246 0.76 +1.0
2,325,963 - ECD_02246 0.76 +0.3
2,325,965 - ECD_02246 0.77 +0.4
2,325,965 - ECD_02246 0.77 +2.6
2,326,040 + ECD_02246 0.84 +0.2
2,326,091 - ECD_02246 0.89 +1.1
2,326,216 + +1.6
2,326,228 - +0.5
2,326,228 - -0.0
2,326,420 - ECD_02247 0.19 +0.5
2,326,694 - ECD_02247 0.42 -0.5
2,326,817 - ECD_02247 0.53 +0.2
2,326,817 - ECD_02247 0.53 -1.8
2,326,858 - ECD_02247 0.56 -0.6
2,327,107 + ECD_02247 0.77 -1.5
2,327,107 + ECD_02247 0.77 -0.4
2,327,108 - ECD_02247 0.77 +0.6
2,327,291 + -0.1
2,327,291 + -0.0
2,327,292 - +1.1
2,327,292 - +0.1
2,327,292 - +0.4
2,327,292 - -0.5
2,327,408 - -1.8
2,327,630 - -0.7
2,327,640 - +0.2

Or see this region's nucleotide sequence