Strain Fitness in Escherichia coli BL21 around ECD_02244

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02242 and ECD_02243 are separated by 82 nucleotidesECD_02243 and ECD_02244 overlap by 1 nucleotidesECD_02244 and ECD_02245 are separated by 65 nucleotides ECD_02242: ECD_02242 - DedA family inner membrane protein, at 2,321,335 to 2,321,994 _02242 ECD_02243: ECD_02243 - tRNA pseudouridine(38-40) synthase, at 2,322,077 to 2,322,889 _02243 ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902 _02244 ECD_02245: ECD_02245 - erythronate-4-phosphate dehydrogenase, at 2,323,968 to 2,325,104 _02245 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2322.012 kb on - strandat 2322.032 kb on + strandat 2322.033 kb on - strandat 2322.070 kb on - strandat 2322.272 kb on - strand, within ECD_02243at 2322.284 kb on - strand, within ECD_02243at 2322.325 kb on - strand, within ECD_02243at 2322.523 kb on - strand, within ECD_02243at 2322.532 kb on - strand, within ECD_02243at 2322.582 kb on - strand, within ECD_02243at 2322.894 kb on - strandat 2323.055 kb on - strand, within ECD_02244at 2323.093 kb on - strand, within ECD_02244at 2323.179 kb on - strand, within ECD_02244at 2323.184 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.447 kb on - strand, within ECD_02244at 2323.565 kb on - strand, within ECD_02244at 2323.970 kb on - strandat 2324.007 kb on - strandat 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.155 kb on + strand, within ECD_02245at 2324.273 kb on + strand, within ECD_02245at 2324.283 kb on - strand, within ECD_02245at 2324.425 kb on - strand, within ECD_02245at 2324.761 kb on + strand, within ECD_02245at 2324.762 kb on - strand, within ECD_02245at 2324.813 kb on - strand, within ECD_02245at 2324.835 kb on - strand, within ECD_02245

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,322,012 - +0.5
2,322,032 + -0.5
2,322,033 - -0.4
2,322,070 - +0.1
2,322,272 - ECD_02243 0.24 +2.3
2,322,284 - ECD_02243 0.25 +1.3
2,322,325 - ECD_02243 0.31 -0.3
2,322,523 - ECD_02243 0.55 +1.3
2,322,532 - ECD_02243 0.56 +1.3
2,322,582 - ECD_02243 0.62 +1.3
2,322,894 - -1.2
2,323,055 - ECD_02244 0.16 -0.8
2,323,093 - ECD_02244 0.20 +1.0
2,323,179 - ECD_02244 0.29 -0.2
2,323,184 - ECD_02244 0.29 -1.4
2,323,279 - ECD_02244 0.38 -2.8
2,323,279 - ECD_02244 0.38 +0.1
2,323,447 - ECD_02244 0.55 -0.9
2,323,565 - ECD_02244 0.67 -1.8
2,323,970 - +0.9
2,324,007 - +0.1
2,324,155 + ECD_02245 0.16 +1.2
2,324,155 + ECD_02245 0.16 +1.0
2,324,155 + ECD_02245 0.16 -0.5
2,324,155 + ECD_02245 0.16 -0.0
2,324,273 + ECD_02245 0.27 -0.0
2,324,283 - ECD_02245 0.28 +0.6
2,324,425 - ECD_02245 0.40 +0.3
2,324,761 + ECD_02245 0.70 -0.4
2,324,762 - ECD_02245 0.70 -0.0
2,324,813 - ECD_02245 0.74 +0.3
2,324,835 - ECD_02245 0.76 -0.1

Or see this region's nucleotide sequence