Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02242 and ECD_02243 are separated by 82 nucleotides ECD_02243 and ECD_02244 overlap by 1 nucleotides ECD_02244 and ECD_02245 are separated by 65 nucleotides
ECD_02242: ECD_02242 - DedA family inner membrane protein, at 2,321,335 to 2,321,994
_02242
ECD_02243: ECD_02243 - tRNA pseudouridine(38-40) synthase, at 2,322,077 to 2,322,889
_02243
ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902
_02244
ECD_02245: ECD_02245 - erythronate-4-phosphate dehydrogenase, at 2,323,968 to 2,325,104
_02245
Position (kb)
2322
2323
2324 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2322.012 kb on - strand at 2322.032 kb on + strand at 2322.033 kb on - strand at 2322.070 kb on - strand at 2322.272 kb on - strand, within ECD_02243 at 2322.284 kb on - strand, within ECD_02243 at 2322.325 kb on - strand, within ECD_02243 at 2322.523 kb on - strand, within ECD_02243 at 2322.532 kb on - strand, within ECD_02243 at 2322.582 kb on - strand, within ECD_02243 at 2322.894 kb on - strand at 2323.055 kb on - strand, within ECD_02244 at 2323.093 kb on - strand, within ECD_02244 at 2323.179 kb on - strand, within ECD_02244 at 2323.184 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.279 kb on - strand, within ECD_02244 at 2323.447 kb on - strand, within ECD_02244 at 2323.565 kb on - strand, within ECD_02244 at 2323.970 kb on - strand at 2324.007 kb on - strand at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.155 kb on + strand, within ECD_02245 at 2324.273 kb on + strand, within ECD_02245 at 2324.283 kb on - strand, within ECD_02245 at 2324.425 kb on - strand, within ECD_02245 at 2324.761 kb on + strand, within ECD_02245 at 2324.762 kb on - strand, within ECD_02245 at 2324.813 kb on - strand, within ECD_02245 at 2324.835 kb on - strand, within ECD_02245
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,322,012 - +0.5 2,322,032 + -0.5 2,322,033 - -0.4 2,322,070 - +0.1 2,322,272 - ECD_02243 0.24 +2.3 2,322,284 - ECD_02243 0.25 +1.3 2,322,325 - ECD_02243 0.31 -0.3 2,322,523 - ECD_02243 0.55 +1.3 2,322,532 - ECD_02243 0.56 +1.3 2,322,582 - ECD_02243 0.62 +1.3 2,322,894 - -1.2 2,323,055 - ECD_02244 0.16 -0.8 2,323,093 - ECD_02244 0.20 +1.0 2,323,179 - ECD_02244 0.29 -0.2 2,323,184 - ECD_02244 0.29 -1.4 2,323,279 - ECD_02244 0.38 -2.8 2,323,279 - ECD_02244 0.38 +0.1 2,323,447 - ECD_02244 0.55 -0.9 2,323,565 - ECD_02244 0.67 -1.8 2,323,970 - +0.9 2,324,007 - +0.1 2,324,155 + ECD_02245 0.16 +1.2 2,324,155 + ECD_02245 0.16 +1.0 2,324,155 + ECD_02245 0.16 -0.5 2,324,155 + ECD_02245 0.16 -0.0 2,324,273 + ECD_02245 0.27 -0.0 2,324,283 - ECD_02245 0.28 +0.6 2,324,425 - ECD_02245 0.40 +0.3 2,324,761 + ECD_02245 0.70 -0.4 2,324,762 - ECD_02245 0.70 -0.0 2,324,813 - ECD_02245 0.74 +0.3 2,324,835 - ECD_02245 0.76 -0.1
Or see this region's nucleotide sequence