Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02230 and ECD_02231 are separated by 196 nucleotides ECD_02231 and ECD_02232 are separated by 7 nucleotides ECD_02232 and ECD_02233 overlap by 4 nucleotides
ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792
_02230
ECD_02231: ECD_02231 - histidine ABC transporter ATPase, at 2,310,989 to 2,311,762
_02231
ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486
_02232
ECD_02233: ECD_02233 - histidine ABC transporter permease, at 2,312,483 to 2,313,169
_02233
Position (kb)
2310
2311
2312 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2310.143 kb on - strand, within ECD_02230 at 2310.145 kb on + strand, within ECD_02230 at 2310.150 kb on - strand, within ECD_02230 at 2310.991 kb on - strand at 2311.106 kb on - strand, within ECD_02231 at 2311.184 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.445 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.665 kb on - strand, within ECD_02231 at 2311.746 kb on - strand at 2311.746 kb on - strand at 2311.843 kb on + strand, within ECD_02232 at 2311.843 kb on + strand, within ECD_02232 at 2311.843 kb on + strand, within ECD_02232 at 2311.844 kb on - strand, within ECD_02232 at 2311.844 kb on - strand, within ECD_02232 at 2311.854 kb on + strand, within ECD_02232 at 2311.898 kb on - strand, within ECD_02232 at 2312.000 kb on - strand, within ECD_02232 at 2312.016 kb on - strand, within ECD_02232 at 2312.239 kb on + strand, within ECD_02232 at 2312.273 kb on - strand, within ECD_02232 at 2312.273 kb on - strand, within ECD_02232 at 2312.301 kb on - strand, within ECD_02232
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,310,143 - ECD_02230 0.27 +0.2 2,310,145 + ECD_02230 0.27 -0.0 2,310,150 - ECD_02230 0.28 -1.1 2,310,991 - -1.1 2,311,106 - ECD_02231 0.15 +1.3 2,311,184 - ECD_02231 0.25 +1.5 2,311,445 - ECD_02231 0.59 +1.2 2,311,445 - ECD_02231 0.59 -0.5 2,311,665 - ECD_02231 0.87 -0.5 2,311,665 - ECD_02231 0.87 +4.3 2,311,746 - -0.8 2,311,746 - -1.2 2,311,843 + ECD_02232 0.10 +1.0 2,311,843 + ECD_02232 0.10 +0.5 2,311,843 + ECD_02232 0.10 -1.2 2,311,844 - ECD_02232 0.10 -0.7 2,311,844 - ECD_02232 0.10 +1.7 2,311,854 + ECD_02232 0.12 +0.8 2,311,898 - ECD_02232 0.18 -1.3 2,312,000 - ECD_02232 0.32 -0.1 2,312,016 - ECD_02232 0.34 +0.3 2,312,239 + ECD_02232 0.65 +0.7 2,312,273 - ECD_02232 0.70 +0.6 2,312,273 - ECD_02232 0.70 +0.5 2,312,301 - ECD_02232 0.74 -2.2
Or see this region's nucleotide sequence