Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02147 and ECD_02148 are separated by 195 nucleotides ECD_02148 and ECD_02149 overlap by 1 nucleotides ECD_02149 and ECD_02150 overlap by 4 nucleotides
ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612
_02147
ECD_02148: ECD_02148 - acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, at 2,213,808 to 2,214,470
_02148
ECD_02149: ECD_02149 - acetyl-CoA:acetoacetyl-CoA transferase, beta subunit, at 2,214,470 to 2,215,120
_02149
ECD_02150: ECD_02150 - short chain fatty acid transporter, at 2,215,117 to 2,216,439
_02150
Position (kb)
2213
2214
2215 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2212.996 kb on + strand, within ECD_02147 at 2213.104 kb on + strand, within ECD_02147 at 2213.158 kb on + strand, within ECD_02147 at 2213.193 kb on - strand, within ECD_02147 at 2213.572 kb on - strand at 2213.608 kb on + strand at 2213.609 kb on - strand at 2213.763 kb on - strand at 2213.830 kb on + strand at 2213.830 kb on + strand at 2213.886 kb on - strand, within ECD_02148 at 2214.074 kb on - strand, within ECD_02148 at 2214.111 kb on - strand, within ECD_02148 at 2214.307 kb on - strand, within ECD_02148 at 2214.356 kb on + strand, within ECD_02148 at 2214.589 kb on + strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.997 kb on + strand, within ECD_02149 at 2215.099 kb on + strand at 2215.116 kb on + strand at 2215.117 kb on - strand at 2215.314 kb on + strand, within ECD_02150
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,212,996 + ECD_02147 0.55 -0.3 2,213,104 + ECD_02147 0.63 -0.1 2,213,158 + ECD_02147 0.67 +0.6 2,213,193 - ECD_02147 0.70 -0.5 2,213,572 - +0.4 2,213,608 + +0.5 2,213,609 - +1.3 2,213,763 - +0.4 2,213,830 + +1.1 2,213,830 + +1.0 2,213,886 - ECD_02148 0.12 +0.6 2,214,074 - ECD_02148 0.40 +1.4 2,214,111 - ECD_02148 0.46 -1.9 2,214,307 - ECD_02148 0.75 +0.3 2,214,356 + ECD_02148 0.83 +0.7 2,214,589 + ECD_02149 0.18 +1.3 2,214,590 - ECD_02149 0.18 +0.5 2,214,590 - ECD_02149 0.18 -1.6 2,214,997 + ECD_02149 0.81 +1.8 2,215,099 + -0.6 2,215,116 + +1.2 2,215,117 - -0.1 2,215,314 + ECD_02150 0.15 +0.8
Or see this region's nucleotide sequence