Strain Fitness in Escherichia coli BL21 around ECD_02141

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02140 and ECD_02141 are separated by 73 nucleotidesECD_02141 and ECD_02142 are separated by 111 nucleotides ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170 _02140 ECD_02141: ECD_02141 - putative thiamine-synthetic flavin transferase lipoprotein, at 2,204,244 to 2,205,299 _02141 ECD_02142: ECD_02142 - outer membrane porin protein C, at 2,205,411 to 2,206,346 _02142 Position (kb) 2204 2205 2206Strain fitness (log2 ratio) -1 0 1 2at 2203.674 kb on + strand, within ECD_02140at 2203.823 kb on + strand, within ECD_02140at 2204.150 kb on + strandat 2204.151 kb on - strandat 2204.151 kb on - strandat 2204.273 kb on + strandat 2204.297 kb on + strandat 2204.326 kb on + strandat 2204.519 kb on - strand, within ECD_02141at 2204.523 kb on - strand, within ECD_02141at 2204.643 kb on - strand, within ECD_02141at 2204.762 kb on - strand, within ECD_02141at 2204.763 kb on + strand, within ECD_02141at 2204.789 kb on - strand, within ECD_02141at 2204.934 kb on - strand, within ECD_02141at 2204.934 kb on - strand, within ECD_02141at 2205.439 kb on - strandat 2205.546 kb on - strand, within ECD_02142at 2205.562 kb on + strand, within ECD_02142at 2205.563 kb on - strand, within ECD_02142at 2205.658 kb on + strand, within ECD_02142at 2205.727 kb on + strand, within ECD_02142at 2205.728 kb on - strand, within ECD_02142at 2205.728 kb on - strand, within ECD_02142at 2205.821 kb on - strand, within ECD_02142at 2205.846 kb on - strand, within ECD_02142at 2205.895 kb on + strand, within ECD_02142at 2205.903 kb on - strand, within ECD_02142at 2205.954 kb on - strand, within ECD_02142at 2205.965 kb on + strand, within ECD_02142at 2205.969 kb on - strand, within ECD_02142at 2206.061 kb on - strand, within ECD_02142at 2206.108 kb on + strand, within ECD_02142at 2206.109 kb on - strand, within ECD_02142at 2206.153 kb on - strand, within ECD_02142at 2206.171 kb on + strand, within ECD_02142

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,203,674 + ECD_02140 0.53 +0.9
2,203,823 + ECD_02140 0.67 -0.5
2,204,150 + +0.3
2,204,151 - +0.3
2,204,151 - -0.0
2,204,273 + +0.6
2,204,297 + +1.7
2,204,326 + +1.5
2,204,519 - ECD_02141 0.26 +2.3
2,204,523 - ECD_02141 0.26 +1.4
2,204,643 - ECD_02141 0.38 +1.4
2,204,762 - ECD_02141 0.49 +1.8
2,204,763 + ECD_02141 0.49 +1.8
2,204,789 - ECD_02141 0.52 +1.6
2,204,934 - ECD_02141 0.65 +1.9
2,204,934 - ECD_02141 0.65 +1.8
2,205,439 - -0.4
2,205,546 - ECD_02142 0.14 -0.5
2,205,562 + ECD_02142 0.16 +0.7
2,205,563 - ECD_02142 0.16 +0.2
2,205,658 + ECD_02142 0.26 +1.3
2,205,727 + ECD_02142 0.34 -0.2
2,205,728 - ECD_02142 0.34 -0.3
2,205,728 - ECD_02142 0.34 -0.1
2,205,821 - ECD_02142 0.44 +0.4
2,205,846 - ECD_02142 0.46 +2.1
2,205,895 + ECD_02142 0.52 +0.5
2,205,903 - ECD_02142 0.53 +0.6
2,205,954 - ECD_02142 0.58 +1.4
2,205,965 + ECD_02142 0.59 -1.6
2,205,969 - ECD_02142 0.60 +0.5
2,206,061 - ECD_02142 0.69 +0.0
2,206,108 + ECD_02142 0.74 -1.6
2,206,109 - ECD_02142 0.75 +1.3
2,206,153 - ECD_02142 0.79 +1.7
2,206,171 + ECD_02142 0.81 -0.0

Or see this region's nucleotide sequence