Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02140 and ECD_02141 are separated by 73 nucleotides ECD_02141 and ECD_02142 are separated by 111 nucleotides
ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170
_02140
ECD_02141: ECD_02141 - putative thiamine-synthetic flavin transferase lipoprotein, at 2,204,244 to 2,205,299
_02141
ECD_02142: ECD_02142 - outer membrane porin protein C, at 2,205,411 to 2,206,346
_02142
Position (kb)
2204
2205
2206 Strain fitness (log2 ratio)
-1
0
1
2 at 2203.674 kb on + strand, within ECD_02140 at 2203.823 kb on + strand, within ECD_02140 at 2204.150 kb on + strand at 2204.151 kb on - strand at 2204.151 kb on - strand at 2204.273 kb on + strand at 2204.297 kb on + strand at 2204.326 kb on + strand at 2204.519 kb on - strand, within ECD_02141 at 2204.523 kb on - strand, within ECD_02141 at 2204.643 kb on - strand, within ECD_02141 at 2204.762 kb on - strand, within ECD_02141 at 2204.763 kb on + strand, within ECD_02141 at 2204.789 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141 at 2205.439 kb on - strand at 2205.546 kb on - strand, within ECD_02142 at 2205.562 kb on + strand, within ECD_02142 at 2205.563 kb on - strand, within ECD_02142 at 2205.658 kb on + strand, within ECD_02142 at 2205.727 kb on + strand, within ECD_02142 at 2205.728 kb on - strand, within ECD_02142 at 2205.728 kb on - strand, within ECD_02142 at 2205.821 kb on - strand, within ECD_02142 at 2205.846 kb on - strand, within ECD_02142 at 2205.895 kb on + strand, within ECD_02142 at 2205.903 kb on - strand, within ECD_02142 at 2205.954 kb on - strand, within ECD_02142 at 2205.965 kb on + strand, within ECD_02142 at 2205.969 kb on - strand, within ECD_02142 at 2206.061 kb on - strand, within ECD_02142 at 2206.108 kb on + strand, within ECD_02142 at 2206.109 kb on - strand, within ECD_02142 at 2206.153 kb on - strand, within ECD_02142 at 2206.171 kb on + strand, within ECD_02142
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,203,674 + ECD_02140 0.53 +0.9 2,203,823 + ECD_02140 0.67 -0.5 2,204,150 + +0.3 2,204,151 - +0.3 2,204,151 - -0.0 2,204,273 + +0.6 2,204,297 + +1.7 2,204,326 + +1.5 2,204,519 - ECD_02141 0.26 +2.3 2,204,523 - ECD_02141 0.26 +1.4 2,204,643 - ECD_02141 0.38 +1.4 2,204,762 - ECD_02141 0.49 +1.8 2,204,763 + ECD_02141 0.49 +1.8 2,204,789 - ECD_02141 0.52 +1.6 2,204,934 - ECD_02141 0.65 +1.9 2,204,934 - ECD_02141 0.65 +1.8 2,205,439 - -0.4 2,205,546 - ECD_02142 0.14 -0.5 2,205,562 + ECD_02142 0.16 +0.7 2,205,563 - ECD_02142 0.16 +0.2 2,205,658 + ECD_02142 0.26 +1.3 2,205,727 + ECD_02142 0.34 -0.2 2,205,728 - ECD_02142 0.34 -0.3 2,205,728 - ECD_02142 0.34 -0.1 2,205,821 - ECD_02142 0.44 +0.4 2,205,846 - ECD_02142 0.46 +2.1 2,205,895 + ECD_02142 0.52 +0.5 2,205,903 - ECD_02142 0.53 +0.6 2,205,954 - ECD_02142 0.58 +1.4 2,205,965 + ECD_02142 0.59 -1.6 2,205,969 - ECD_02142 0.60 +0.5 2,206,061 - ECD_02142 0.69 +0.0 2,206,108 + ECD_02142 0.74 -1.6 2,206,109 - ECD_02142 0.75 +1.3 2,206,153 - ECD_02142 0.79 +1.7 2,206,171 + ECD_02142 0.81 -0.0
Or see this region's nucleotide sequence