Strain Fitness in Escherichia coli BL21 around ECD_02140

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02138 and ECD_02139 are separated by 75 nucleotidesECD_02139 and ECD_02140 overlap by 1 nucleotidesECD_02140 and ECD_02141 are separated by 73 nucleotides ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380 _02138 ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106 _02139 ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170 _02140 ECD_02141: ECD_02141 - putative thiamine-synthetic flavin transferase lipoprotein, at 2,204,244 to 2,205,299 _02141 Position (kb) 2203 2204 2205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2202.208 kb on - strand, within ECD_02138at 2202.208 kb on - strand, within ECD_02138at 2202.367 kb on - strandat 2202.657 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.996 kb on - strand, within ECD_02139at 2203.214 kb on + strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140at 2203.674 kb on + strand, within ECD_02140at 2203.823 kb on + strand, within ECD_02140at 2204.150 kb on + strandat 2204.151 kb on - strandat 2204.151 kb on - strandat 2204.273 kb on + strandat 2204.297 kb on + strandat 2204.326 kb on + strandat 2204.519 kb on - strand, within ECD_02141at 2204.523 kb on - strand, within ECD_02141at 2204.643 kb on - strand, within ECD_02141at 2204.762 kb on - strand, within ECD_02141at 2204.763 kb on + strand, within ECD_02141at 2204.789 kb on - strand, within ECD_02141at 2204.934 kb on - strand, within ECD_02141at 2204.934 kb on - strand, within ECD_02141

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
2,202,208 - ECD_02138 0.89 +0.6
2,202,208 - ECD_02138 0.89 +1.0
2,202,367 - -0.9
2,202,657 + ECD_02139 0.31 -0.9
2,202,941 + ECD_02139 0.75 -1.3
2,202,941 + ECD_02139 0.75 +0.7
2,202,941 + ECD_02139 0.75 +0.4
2,202,941 + ECD_02139 0.75 -1.1
2,202,942 - ECD_02139 0.75 +0.0
2,202,942 - ECD_02139 0.75 +0.5
2,202,942 - ECD_02139 0.75 -2.1
2,202,942 - ECD_02139 0.75 +0.7
2,202,942 - ECD_02139 0.75 +0.3
2,202,942 - ECD_02139 0.75 -0.2
2,202,942 - ECD_02139 0.75 -0.6
2,202,942 - ECD_02139 0.75 +0.3
2,202,942 - ECD_02139 0.75 -0.3
2,202,942 - ECD_02139 0.75 -0.2
2,202,942 - ECD_02139 0.75 +5.6
2,202,942 - ECD_02139 0.75 -0.4
2,202,996 - ECD_02139 0.83 -0.6
2,203,214 + ECD_02140 0.10 +0.4
2,203,215 - ECD_02140 0.10 +1.3
2,203,215 - ECD_02140 0.10 +0.5
2,203,674 + ECD_02140 0.53 +0.9
2,203,823 + ECD_02140 0.67 -0.5
2,204,150 + +0.3
2,204,151 - +0.3
2,204,151 - -0.0
2,204,273 + +0.6
2,204,297 + +1.7
2,204,326 + +1.5
2,204,519 - ECD_02141 0.26 +2.3
2,204,523 - ECD_02141 0.26 +1.4
2,204,643 - ECD_02141 0.38 +1.4
2,204,762 - ECD_02141 0.49 +1.8
2,204,763 + ECD_02141 0.49 +1.8
2,204,789 - ECD_02141 0.52 +1.6
2,204,934 - ECD_02141 0.65 +1.9
2,204,934 - ECD_02141 0.65 +1.8

Or see this region's nucleotide sequence