Strain Fitness in Escherichia coli BL21 around ECD_02123

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02121 and ECD_02122 overlap by 4 nucleotidesECD_02122 and ECD_02123 overlap by 4 nucleotidesECD_02123 and ECD_02124 overlap by 4 nucleotidesECD_02124 and ECD_02125 overlap by 4 nucleotidesECD_02125 and ECD_02126 overlap by 4 nucleotides ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060 _02121 ECD_02122: ECD_02122 - periplasmic thioredoxin of cytochrome c-type biogenesis, at 2,186,057 to 2,186,614 _02122 ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554 _02123 ECD_02124: ECD_02124 - periplasmic heme chaperone, at 2,188,551 to 2,189,030 _02124 ECD_02125: ECD_02125 - cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor, at 2,189,027 to 2,189,236 _02125 ECD_02126: ECD_02126 - heme export ABC transporter permease; CcmE-interacting protein, at 2,189,233 to 2,189,970 _02126 Position (kb) 2186 2187 2188 2189Strain fitness (log2 ratio) -1 0 1 2at 2185.620 kb on - strand, within ECD_02121at 2185.702 kb on + strand, within ECD_02121at 2185.703 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.728 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.815 kb on - strand, within ECD_02121at 2185.817 kb on - strand, within ECD_02121at 2185.817 kb on - strand, within ECD_02121at 2186.080 kb on - strandat 2186.300 kb on - strand, within ECD_02122at 2186.301 kb on + strand, within ECD_02122at 2186.601 kb on - strandat 2186.859 kb on - strand, within ECD_02123at 2186.874 kb on - strand, within ECD_02123at 2187.036 kb on - strand, within ECD_02123at 2187.036 kb on - strand, within ECD_02123at 2187.725 kb on - strand, within ECD_02123at 2187.944 kb on + strand, within ECD_02123at 2187.945 kb on - strand, within ECD_02123at 2187.945 kb on - strand, within ECD_02123at 2188.014 kb on - strand, within ECD_02123at 2188.020 kb on + strand, within ECD_02123at 2188.020 kb on + strand, within ECD_02123at 2188.022 kb on + strand, within ECD_02123at 2188.022 kb on + strand, within ECD_02123at 2188.022 kb on + strand, within ECD_02123at 2188.023 kb on - strand, within ECD_02123at 2188.023 kb on - strand, within ECD_02123at 2188.023 kb on - strand, within ECD_02123at 2188.181 kb on - strand, within ECD_02123at 2188.346 kb on + strand, within ECD_02123at 2188.346 kb on + strand, within ECD_02123at 2188.347 kb on - strand, within ECD_02123at 2188.347 kb on - strand, within ECD_02123at 2188.568 kb on + strandat 2188.569 kb on - strandat 2188.670 kb on + strand, within ECD_02124at 2188.671 kb on - strand, within ECD_02124at 2188.758 kb on + strand, within ECD_02124at 2188.758 kb on + strand, within ECD_02124at 2188.759 kb on - strand, within ECD_02124at 2188.759 kb on - strand, within ECD_02124

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,185,620 - ECD_02121 0.58 -0.1
2,185,702 + ECD_02121 0.66 +1.3
2,185,703 - ECD_02121 0.66 +0.8
2,185,705 - ECD_02121 0.66 +0.5
2,185,705 - ECD_02121 0.66 -0.8
2,185,705 - ECD_02121 0.66 +0.2
2,185,728 - ECD_02121 0.68 -0.3
2,185,815 - ECD_02121 0.77 +0.7
2,185,815 - ECD_02121 0.77 -0.0
2,185,815 - ECD_02121 0.77 -0.6
2,185,815 - ECD_02121 0.77 +0.9
2,185,817 - ECD_02121 0.77 +0.6
2,185,817 - ECD_02121 0.77 +0.1
2,186,080 - -1.3
2,186,300 - ECD_02122 0.44 +0.8
2,186,301 + ECD_02122 0.44 +0.6
2,186,601 - +1.7
2,186,859 - ECD_02123 0.13 +0.7
2,186,874 - ECD_02123 0.14 -0.3
2,187,036 - ECD_02123 0.22 -0.8
2,187,036 - ECD_02123 0.22 +0.1
2,187,725 - ECD_02123 0.57 -0.0
2,187,944 + ECD_02123 0.69 -1.0
2,187,945 - ECD_02123 0.69 -1.2
2,187,945 - ECD_02123 0.69 +0.0
2,188,014 - ECD_02123 0.72 -1.3
2,188,020 + ECD_02123 0.72 +0.5
2,188,020 + ECD_02123 0.72 +1.9
2,188,022 + ECD_02123 0.73 +0.9
2,188,022 + ECD_02123 0.73 -0.8
2,188,022 + ECD_02123 0.73 -1.2
2,188,023 - ECD_02123 0.73 +0.1
2,188,023 - ECD_02123 0.73 +1.7
2,188,023 - ECD_02123 0.73 -0.6
2,188,181 - ECD_02123 0.81 +0.9
2,188,346 + ECD_02123 0.89 +0.1
2,188,346 + ECD_02123 0.89 -0.1
2,188,347 - ECD_02123 0.89 +0.4
2,188,347 - ECD_02123 0.89 +0.3
2,188,568 + +0.9
2,188,569 - +1.0
2,188,670 + ECD_02124 0.25 -0.2
2,188,671 - ECD_02124 0.25 +0.1
2,188,758 + ECD_02124 0.43 +2.2
2,188,758 + ECD_02124 0.43 +1.8
2,188,759 - ECD_02124 0.43 -0.3
2,188,759 - ECD_02124 0.43 +0.7

Or see this region's nucleotide sequence