Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02121 and ECD_02122 overlap by 4 nucleotides ECD_02122 and ECD_02123 overlap by 4 nucleotides ECD_02123 and ECD_02124 overlap by 4 nucleotides ECD_02124 and ECD_02125 overlap by 4 nucleotides ECD_02125 and ECD_02126 overlap by 4 nucleotides
ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060
_02121
ECD_02122: ECD_02122 - periplasmic thioredoxin of cytochrome c-type biogenesis, at 2,186,057 to 2,186,614
_02122
ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554
_02123
ECD_02124: ECD_02124 - periplasmic heme chaperone, at 2,188,551 to 2,189,030
_02124
ECD_02125: ECD_02125 - cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor, at 2,189,027 to 2,189,236
_02125
ECD_02126: ECD_02126 - heme export ABC transporter permease; CcmE-interacting protein, at 2,189,233 to 2,189,970
_02126
Position (kb)
2186
2187
2188
2189 Strain fitness (log2 ratio)
-1
0
1
2 at 2185.620 kb on - strand, within ECD_02121 at 2185.702 kb on + strand, within ECD_02121 at 2185.703 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.728 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2186.080 kb on - strand at 2186.300 kb on - strand, within ECD_02122 at 2186.301 kb on + strand, within ECD_02122 at 2186.601 kb on - strand at 2186.859 kb on - strand, within ECD_02123 at 2186.874 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123 at 2187.725 kb on - strand, within ECD_02123 at 2187.944 kb on + strand, within ECD_02123 at 2187.945 kb on - strand, within ECD_02123 at 2187.945 kb on - strand, within ECD_02123 at 2188.014 kb on - strand, within ECD_02123 at 2188.020 kb on + strand, within ECD_02123 at 2188.020 kb on + strand, within ECD_02123 at 2188.022 kb on + strand, within ECD_02123 at 2188.022 kb on + strand, within ECD_02123 at 2188.022 kb on + strand, within ECD_02123 at 2188.023 kb on - strand, within ECD_02123 at 2188.023 kb on - strand, within ECD_02123 at 2188.023 kb on - strand, within ECD_02123 at 2188.181 kb on - strand, within ECD_02123 at 2188.346 kb on + strand, within ECD_02123 at 2188.346 kb on + strand, within ECD_02123 at 2188.347 kb on - strand, within ECD_02123 at 2188.347 kb on - strand, within ECD_02123 at 2188.568 kb on + strand at 2188.569 kb on - strand at 2188.670 kb on + strand, within ECD_02124 at 2188.671 kb on - strand, within ECD_02124 at 2188.758 kb on + strand, within ECD_02124 at 2188.758 kb on + strand, within ECD_02124 at 2188.759 kb on - strand, within ECD_02124 at 2188.759 kb on - strand, within ECD_02124
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,185,620 - ECD_02121 0.58 -0.1 2,185,702 + ECD_02121 0.66 +1.3 2,185,703 - ECD_02121 0.66 +0.8 2,185,705 - ECD_02121 0.66 +0.5 2,185,705 - ECD_02121 0.66 -0.8 2,185,705 - ECD_02121 0.66 +0.2 2,185,728 - ECD_02121 0.68 -0.3 2,185,815 - ECD_02121 0.77 +0.7 2,185,815 - ECD_02121 0.77 -0.0 2,185,815 - ECD_02121 0.77 -0.6 2,185,815 - ECD_02121 0.77 +0.9 2,185,817 - ECD_02121 0.77 +0.6 2,185,817 - ECD_02121 0.77 +0.1 2,186,080 - -1.3 2,186,300 - ECD_02122 0.44 +0.8 2,186,301 + ECD_02122 0.44 +0.6 2,186,601 - +1.7 2,186,859 - ECD_02123 0.13 +0.7 2,186,874 - ECD_02123 0.14 -0.3 2,187,036 - ECD_02123 0.22 -0.8 2,187,036 - ECD_02123 0.22 +0.1 2,187,725 - ECD_02123 0.57 -0.0 2,187,944 + ECD_02123 0.69 -1.0 2,187,945 - ECD_02123 0.69 -1.2 2,187,945 - ECD_02123 0.69 +0.0 2,188,014 - ECD_02123 0.72 -1.3 2,188,020 + ECD_02123 0.72 +0.5 2,188,020 + ECD_02123 0.72 +1.9 2,188,022 + ECD_02123 0.73 +0.9 2,188,022 + ECD_02123 0.73 -0.8 2,188,022 + ECD_02123 0.73 -1.2 2,188,023 - ECD_02123 0.73 +0.1 2,188,023 - ECD_02123 0.73 +1.7 2,188,023 - ECD_02123 0.73 -0.6 2,188,181 - ECD_02123 0.81 +0.9 2,188,346 + ECD_02123 0.89 +0.1 2,188,346 + ECD_02123 0.89 -0.1 2,188,347 - ECD_02123 0.89 +0.4 2,188,347 - ECD_02123 0.89 +0.3 2,188,568 + +0.9 2,188,569 - +1.0 2,188,670 + ECD_02124 0.25 -0.2 2,188,671 - ECD_02124 0.25 +0.1 2,188,758 + ECD_02124 0.43 +2.2 2,188,758 + ECD_02124 0.43 +1.8 2,188,759 - ECD_02124 0.43 -0.3 2,188,759 - ECD_02124 0.43 +0.7
Or see this region's nucleotide sequence