Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02102 and ECD_02103 are separated by 117 nucleotides ECD_02103 and ECD_02104 are separated by 38 nucleotides
ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560
_02102
ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664
_02103
ECD_02104: ECD_02104 - lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase, at 2,163,703 to 2,164,416
_02104
Position (kb)
2162
2163
2164 Strain fitness (log2 ratio)
-1
0
1
2 at 2162.003 kb on + strand, within ECD_02102 at 2162.082 kb on + strand, within ECD_02102 at 2162.083 kb on - strand, within ECD_02102 at 2162.117 kb on - strand, within ECD_02102 at 2162.131 kb on - strand, within ECD_02102 at 2162.152 kb on - strand, within ECD_02102 at 2162.253 kb on + strand, within ECD_02102 at 2162.651 kb on - strand at 2162.655 kb on + strand at 2162.656 kb on - strand at 2162.908 kb on + strand, within ECD_02103 at 2163.211 kb on - strand, within ECD_02103 at 2163.336 kb on + strand, within ECD_02103 at 2163.690 kb on - strand at 2163.725 kb on + strand at 2163.769 kb on + strand at 2163.972 kb on + strand, within ECD_02104 at 2163.981 kb on + strand, within ECD_02104 at 2164.001 kb on + strand, within ECD_02104 at 2164.346 kb on + strand at 2164.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,162,003 + ECD_02102 0.62 +2.2 2,162,082 + ECD_02102 0.67 -0.6 2,162,083 - ECD_02102 0.67 +0.2 2,162,117 - ECD_02102 0.70 -0.1 2,162,131 - ECD_02102 0.71 -0.5 2,162,152 - ECD_02102 0.72 -0.6 2,162,253 + ECD_02102 0.79 -0.6 2,162,651 - +0.4 2,162,655 + +0.9 2,162,656 - +1.0 2,162,908 + ECD_02103 0.23 +1.9 2,163,211 - ECD_02103 0.54 -0.1 2,163,336 + ECD_02103 0.67 +0.3 2,163,690 - -0.5 2,163,725 + +0.5 2,163,769 + +0.1 2,163,972 + ECD_02104 0.38 -0.4 2,163,981 + ECD_02104 0.39 -0.5 2,164,001 + ECD_02104 0.42 +0.0 2,164,346 + -1.3 2,164,414 + +1.6
Or see this region's nucleotide sequence