Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02053 and ECD_02054 are separated by 46 nucleotides ECD_02054 and ECD_02055 overlap by 4 nucleotides ECD_02055 and ECD_02056 are separated by 221 nucleotides
ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059
_02053
ECD_02054: ECD_02054 - putative response regulator in two-component system withYehU, at 2,107,106 to 2,107,825
_02054
ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507
_02055
ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460
_02056
Position (kb)
2107
2108
2109
2110 Strain fitness (log2 ratio)
-1
0
1
2 at 2106.991 kb on - strand, within ECD_02053 at 2107.025 kb on + strand at 2107.026 kb on - strand at 2107.055 kb on - strand at 2107.055 kb on - strand at 2107.335 kb on + strand, within ECD_02054 at 2107.336 kb on - strand, within ECD_02054 at 2107.597 kb on + strand, within ECD_02054 at 2107.598 kb on - strand, within ECD_02054 at 2107.866 kb on - strand at 2107.866 kb on - strand at 2107.866 kb on - strand at 2107.870 kb on - strand at 2107.922 kb on - strand at 2108.430 kb on - strand, within ECD_02055 at 2108.623 kb on + strand, within ECD_02055 at 2108.624 kb on - strand, within ECD_02055 at 2108.672 kb on - strand, within ECD_02055 at 2108.679 kb on - strand, within ECD_02055 at 2108.931 kb on + strand, within ECD_02055 at 2109.014 kb on + strand, within ECD_02055 at 2109.217 kb on + strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.218 kb on - strand, within ECD_02055 at 2109.298 kb on - strand, within ECD_02055 at 2109.307 kb on - strand, within ECD_02055 at 2109.369 kb on - strand at 2109.643 kb on + strand at 2109.773 kb on + strand at 2110.000 kb on - strand, within ECD_02056 at 2110.091 kb on + strand, within ECD_02056 at 2110.173 kb on + strand, within ECD_02056 at 2110.174 kb on - strand, within ECD_02056 at 2110.250 kb on + strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056 at 2110.359 kb on - strand, within ECD_02056
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 2,106,991 - ECD_02053 0.85 +1.4 2,107,025 + -0.6 2,107,026 - -0.6 2,107,055 - +0.4 2,107,055 - +0.9 2,107,335 + ECD_02054 0.32 +0.7 2,107,336 - ECD_02054 0.32 -0.3 2,107,597 + ECD_02054 0.68 +0.4 2,107,598 - ECD_02054 0.68 +0.9 2,107,866 - +0.9 2,107,866 - -0.8 2,107,866 - +0.7 2,107,870 - +0.8 2,107,922 - +1.0 2,108,430 - ECD_02055 0.36 -0.2 2,108,623 + ECD_02055 0.48 +1.7 2,108,624 - ECD_02055 0.48 +0.2 2,108,672 - ECD_02055 0.50 +1.1 2,108,679 - ECD_02055 0.51 +0.5 2,108,931 + ECD_02055 0.66 -0.3 2,109,014 + ECD_02055 0.71 +1.2 2,109,217 + ECD_02055 0.83 +0.6 2,109,218 - ECD_02055 0.83 -0.4 2,109,218 - ECD_02055 0.83 +1.9 2,109,298 - ECD_02055 0.88 -1.3 2,109,307 - ECD_02055 0.88 +0.0 2,109,369 - -0.7 2,109,643 + +0.3 2,109,773 + -1.1 2,110,000 - ECD_02056 0.37 +0.8 2,110,091 + ECD_02056 0.49 +0.7 2,110,173 + ECD_02056 0.61 -0.6 2,110,174 - ECD_02056 0.61 +1.4 2,110,250 + ECD_02056 0.71 +1.4 2,110,359 - ECD_02056 0.86 -1.3 2,110,359 - ECD_02056 0.86 +1.2
Or see this region's nucleotide sequence