Strain Fitness in Escherichia coli BL21 around ECD_02055

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02053 and ECD_02054 are separated by 46 nucleotidesECD_02054 and ECD_02055 overlap by 4 nucleotidesECD_02055 and ECD_02056 are separated by 221 nucleotides ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059 _02053 ECD_02054: ECD_02054 - putative response regulator in two-component system withYehU, at 2,107,106 to 2,107,825 _02054 ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507 _02055 ECD_02056: ECD_02056 - transcriptional activator of csgD and csgBA, at 2,109,729 to 2,110,460 _02056 Position (kb) 2107 2108 2109 2110Strain fitness (log2 ratio) -1 0 1 2at 2106.991 kb on - strand, within ECD_02053at 2107.025 kb on + strandat 2107.026 kb on - strandat 2107.055 kb on - strandat 2107.055 kb on - strandat 2107.335 kb on + strand, within ECD_02054at 2107.336 kb on - strand, within ECD_02054at 2107.597 kb on + strand, within ECD_02054at 2107.598 kb on - strand, within ECD_02054at 2107.866 kb on - strandat 2107.866 kb on - strandat 2107.866 kb on - strandat 2107.870 kb on - strandat 2107.922 kb on - strandat 2108.430 kb on - strand, within ECD_02055at 2108.623 kb on + strand, within ECD_02055at 2108.624 kb on - strand, within ECD_02055at 2108.672 kb on - strand, within ECD_02055at 2108.679 kb on - strand, within ECD_02055at 2108.931 kb on + strand, within ECD_02055at 2109.014 kb on + strand, within ECD_02055at 2109.217 kb on + strand, within ECD_02055at 2109.218 kb on - strand, within ECD_02055at 2109.218 kb on - strand, within ECD_02055at 2109.298 kb on - strand, within ECD_02055at 2109.307 kb on - strand, within ECD_02055at 2109.369 kb on - strandat 2109.643 kb on + strandat 2109.773 kb on + strandat 2110.000 kb on - strand, within ECD_02056at 2110.091 kb on + strand, within ECD_02056at 2110.173 kb on + strand, within ECD_02056at 2110.174 kb on - strand, within ECD_02056at 2110.250 kb on + strand, within ECD_02056at 2110.359 kb on - strand, within ECD_02056at 2110.359 kb on - strand, within ECD_02056

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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2,106,991 - ECD_02053 0.85 +1.4
2,107,025 + -0.6
2,107,026 - -0.6
2,107,055 - +0.4
2,107,055 - +0.9
2,107,335 + ECD_02054 0.32 +0.7
2,107,336 - ECD_02054 0.32 -0.3
2,107,597 + ECD_02054 0.68 +0.4
2,107,598 - ECD_02054 0.68 +0.9
2,107,866 - +0.9
2,107,866 - -0.8
2,107,866 - +0.7
2,107,870 - +0.8
2,107,922 - +1.0
2,108,430 - ECD_02055 0.36 -0.2
2,108,623 + ECD_02055 0.48 +1.7
2,108,624 - ECD_02055 0.48 +0.2
2,108,672 - ECD_02055 0.50 +1.1
2,108,679 - ECD_02055 0.51 +0.5
2,108,931 + ECD_02055 0.66 -0.3
2,109,014 + ECD_02055 0.71 +1.2
2,109,217 + ECD_02055 0.83 +0.6
2,109,218 - ECD_02055 0.83 -0.4
2,109,218 - ECD_02055 0.83 +1.9
2,109,298 - ECD_02055 0.88 -1.3
2,109,307 - ECD_02055 0.88 +0.0
2,109,369 - -0.7
2,109,643 + +0.3
2,109,773 + -1.1
2,110,000 - ECD_02056 0.37 +0.8
2,110,091 + ECD_02056 0.49 +0.7
2,110,173 + ECD_02056 0.61 -0.6
2,110,174 - ECD_02056 0.61 +1.4
2,110,250 + ECD_02056 0.71 +1.4
2,110,359 - ECD_02056 0.86 -1.3
2,110,359 - ECD_02056 0.86 +1.2

Or see this region's nucleotide sequence