Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01805 and ECD_01806 are separated by 79 nucleotides ECD_01806 and ECD_01807 are separated by 117 nucleotides ECD_01807 and ECD_01808 are separated by 104 nucleotides ECD_01808 and ECD_01809 are separated by 0 nucleotides
ECD_01805: ECD_01805 - MCE domain protein, at 1,863,235 to 1,865,868
_01805
ECD_01806: ECD_01806 - 16S rRNA m(5)C1407 methyltransferase, SAM-dependent, at 1,865,948 to 1,867,387
_01806
ECD_01807: ECD_01807 - uncharacterized protein, at 1,867,505 to 1,867,741
_01807
ECD_01808: ECD_01808 - uncharacterized protein, at 1,867,846 to 1,868,037
_01808
ECD_01809: ECD_01809 - serine/threonine-specific protein phosphatase 1, at 1,868,038 to 1,868,694
_01809
Position (kb) 1865
1866
1867
1868 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1865.030 kb on + strand, within ECD_01805 at 1865.366 kb on + strand, within ECD_01805 at 1865.367 kb on - strand, within ECD_01805 at 1865.389 kb on - strand, within ECD_01805 at 1865.484 kb on + strand, within ECD_01805 at 1865.626 kb on + strand at 1865.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,865,030 + ECD_01805 0.68 -0.0 1,865,366 + ECD_01805 0.81 +0.2 1,865,367 - ECD_01805 0.81 -0.9 1,865,389 - ECD_01805 0.82 +0.7 1,865,484 + ECD_01805 0.85 +5.4 1,865,626 + +0.8 1,865,643 + +1.9
Or see this region's nucleotide sequence