Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01652 and ECD_01654 are separated by 547 nucleotides ECD_01654 and ECD_01655 are separated by 99 nucleotides ECD_01655 and ECD_01656 overlap by 4 nucleotides
ECD_01652: ECD_01652 - component of SufBCD complex, at 1,707,791 to 1,708,801
_01652
ECD_01654: ECD_01654 - uncharacterized protein, at 1,709,349 to 1,709,537
_01654
ECD_01655: ECD_01655 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 1,709,637 to 1,710,047
_01655
ECD_01656: ECD_01656 - putative FAD-linked oxidoreductase, at 1,710,044 to 1,713,100
_01656
Position (kb)
1709
1710
1711 Strain fitness (log2 ratio)
-1
0
1
2 at 1708.643 kb on - strand, within ECD_01652 at 1708.651 kb on - strand, within ECD_01652 at 1708.655 kb on - strand, within ECD_01652 at 1708.673 kb on + strand, within ECD_01652 at 1708.804 kb on - strand at 1708.831 kb on + strand at 1708.926 kb on + strand at 1708.927 kb on - strand at 1709.268 kb on + strand at 1709.537 kb on + strand at 1709.833 kb on - strand, within ECD_01655 at 1709.833 kb on - strand, within ECD_01655 at 1709.833 kb on - strand, within ECD_01655 at 1710.475 kb on - strand, within ECD_01656 at 1710.703 kb on - strand, within ECD_01656 at 1710.706 kb on - strand, within ECD_01656 at 1710.945 kb on + strand, within ECD_01656
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,708,643 - ECD_01652 0.84 -0.5 1,708,651 - ECD_01652 0.85 -0.5 1,708,655 - ECD_01652 0.85 +2.0 1,708,673 + ECD_01652 0.87 +0.7 1,708,804 - +0.0 1,708,831 + +0.9 1,708,926 + +1.1 1,708,927 - -0.3 1,709,268 + -1.2 1,709,537 + -0.2 1,709,833 - ECD_01655 0.48 -1.2 1,709,833 - ECD_01655 0.48 +0.2 1,709,833 - ECD_01655 0.48 -1.2 1,710,475 - ECD_01656 0.14 -1.0 1,710,703 - ECD_01656 0.22 -0.1 1,710,706 - ECD_01656 0.22 +1.1 1,710,945 + ECD_01656 0.29 -0.4
Or see this region's nucleotide sequence