Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01556 and ECD_01557 are separated by 60 nucleotides ECD_01557 and ECD_01558 are separated by 10 nucleotides ECD_01558 and ECD_01559 are separated by 1 nucleotides
ECD_01556: ECD_01556 - putative selenate reductase, periplasmic, at 1,603,266 to 1,605,692
_01556
ECD_01557: ECD_01557 - S- and N-oxide reductase, A subunit, periplasmic, at 1,605,753 to 1,608,176
_01557
ECD_01558: ECD_01558 - oxidoreductase, Fe-S subunit, at 1,608,187 to 1,608,804
_01558
ECD_01559: ECD_01559 - oxidoreductase, membrane subunit, at 1,608,806 to 1,609,660
_01559
Position (kb)
1605
1606
1607
1608
1609 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1605.031 kb on - strand, within ECD_01556 at 1605.665 kb on + strand at 1605.935 kb on + strand at 1606.150 kb on + strand, within ECD_01557 at 1606.332 kb on + strand, within ECD_01557 at 1606.672 kb on - strand, within ECD_01557 at 1606.769 kb on + strand, within ECD_01557 at 1607.419 kb on - strand, within ECD_01557 at 1607.738 kb on + strand, within ECD_01557 at 1608.605 kb on + strand, within ECD_01558 at 1608.605 kb on + strand, within ECD_01558 at 1608.605 kb on + strand, within ECD_01558
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,605,031 - ECD_01556 0.73 -0.1 1,605,665 + +0.2 1,605,935 + +1.5 1,606,150 + ECD_01557 0.16 -0.3 1,606,332 + ECD_01557 0.24 +1.3 1,606,672 - ECD_01557 0.38 -0.3 1,606,769 + ECD_01557 0.42 -0.5 1,607,419 - ECD_01557 0.69 +0.1 1,607,738 + ECD_01557 0.82 -3.7 1,608,605 + ECD_01558 0.68 +1.3 1,608,605 + ECD_01558 0.68 +0.7 1,608,605 + ECD_01558 0.68 +1.5
Or see this region's nucleotide sequence