Strain Fitness in Escherichia coli BL21 around ECD_01350

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01349 and ECD_01350 are separated by 273 nucleotidesECD_01350 and ECD_01351 overlap by 4 nucleotidesECD_01351 and ECD_01352 are separated by 110 nucleotides ECD_01349: ECD_01349 - pyruvate-flavodoxin oxidoreductase, at 1,412,819 to 1,416,343 _01349 ECD_01350: ECD_01350 - DUF333 family putative lipoprotein, at 1,416,617 to 1,416,883 _01350 ECD_01351: ECD_01351 - heat-inducible lipoprotein involved in novobiocin resistance, at 1,416,880 to 1,417,302 _01351 ECD_01352: ECD_01352 - fermentative D-lactate dehydrogenase, NAD-dependent, at 1,417,413 to 1,418,402 _01352 Position (kb) 1416 1417Strain fitness (log2 ratio) -1 0 1 2at 1416.087 kb on - strandat 1416.335 kb on - strandat 1416.335 kb on - strandat 1416.354 kb on + strandat 1416.355 kb on - strandat 1416.355 kb on - strandat 1416.399 kb on - strandat 1416.576 kb on + strandat 1417.250 kb on - strand, within ECD_01351at 1417.459 kb on - strandat 1417.841 kb on - strand, within ECD_01352

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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1,416,087 - -0.1
1,416,335 - +2.5
1,416,335 - +0.8
1,416,354 + -0.1
1,416,355 - +0.3
1,416,355 - +0.3
1,416,399 - -0.9
1,416,576 + +0.2
1,417,250 - ECD_01351 0.87 +1.2
1,417,459 - -0.4
1,417,841 - ECD_01352 0.43 +1.4

Or see this region's nucleotide sequence