Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01122 and ECD_01123 overlap by 4 nucleotides ECD_01123 and ECD_01124 are separated by 13 nucleotides ECD_01124 and ECD_01125 are separated by 249 nucleotides
ECD_01122: ECD_01122 - spermidine/putrescine ABC transporter permease, at 1,186,194 to 1,186,988
_01122
ECD_01123: ECD_01123 - spermidine/putrescine ABC transporter permease, at 1,186,985 to 1,187,812
_01123
ECD_01124: ECD_01124 - spermidine/putrescine ABC transporter ATPase, at 1,187,826 to 1,188,962
_01124
ECD_01125: ECD_01125 - peptidase T, at 1,189,212 to 1,190,438
_01125
Position (kb) 1187
1188
1189 Strain fitness (log2 ratio) -1
0
1 at 1186.934 kb on - strand at 1187.176 kb on - strand, within ECD_01123 at 1187.649 kb on - strand, within ECD_01123 at 1188.067 kb on - strand, within ECD_01124 at 1188.067 kb on - strand, within ECD_01124 at 1188.128 kb on - strand, within ECD_01124 at 1188.950 kb on + strand at 1189.178 kb on + strand at 1189.366 kb on + strand, within ECD_01125 at 1189.610 kb on + strand, within ECD_01125
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,186,934 - -1.3 1,187,176 - ECD_01123 0.23 +0.5 1,187,649 - ECD_01123 0.80 +0.1 1,188,067 - ECD_01124 0.21 -1.2 1,188,067 - ECD_01124 0.21 -0.8 1,188,128 - ECD_01124 0.27 -0.1 1,188,950 + -0.5 1,189,178 + +0.5 1,189,366 + ECD_01125 0.13 -0.3 1,189,610 + ECD_01125 0.32 -1.2
Or see this region's nucleotide sequence