Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01004 and ECD_01005 are separated by 282 nucleotides ECD_01005 and ECD_01006 are separated by 37 nucleotides ECD_01006 and ECD_01007 are separated by 20 nucleotides
ECD_01004: ECD_01004 - uncharacterized protein, at 1,068,324 to 1,069,583
_01004
ECD_01005: ECD_01005 - glucose-1-phosphatase/inositol phosphatase, at 1,069,866 to 1,071,107
_01005
ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372
_01006
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
Position (kb) 1069
1070
1071
1072 Strain fitness (log2 ratio) -1
0
1
2 at 1069.880 kb on - strand at 1070.106 kb on + strand, within ECD_01005 at 1070.118 kb on + strand, within ECD_01005 at 1070.152 kb on + strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.193 kb on + strand, within ECD_01005 at 1070.433 kb on + strand, within ECD_01005 at 1070.584 kb on - strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.975 kb on + strand, within ECD_01005 at 1071.194 kb on - strand, within ECD_01006 at 1071.194 kb on - strand, within ECD_01006 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.618 kb on - strand, within ECD_01007 at 1071.621 kb on - strand, within ECD_01007 at 1071.679 kb on + strand, within ECD_01007 at 1072.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 1,069,880 - -0.4 1,070,106 + ECD_01005 0.19 -0.2 1,070,118 + ECD_01005 0.20 +0.3 1,070,152 + ECD_01005 0.23 +0.4 1,070,186 - ECD_01005 0.26 +1.0 1,070,186 - ECD_01005 0.26 -1.3 1,070,193 + ECD_01005 0.26 -0.3 1,070,433 + ECD_01005 0.46 +1.8 1,070,584 - ECD_01005 0.58 -0.4 1,070,946 + ECD_01005 0.87 +0.9 1,070,946 + ECD_01005 0.87 +1.5 1,070,975 + ECD_01005 0.89 +0.3 1,071,194 - ECD_01006 0.21 -0.4 1,071,194 - ECD_01006 0.21 -0.1 1,071,580 - ECD_01007 0.31 -1.1 1,071,580 - ECD_01007 0.31 -0.4 1,071,580 - ECD_01007 0.31 -0.1 1,071,618 - ECD_01007 0.38 +0.3 1,071,621 - ECD_01007 0.38 -0.2 1,071,679 + ECD_01007 0.48 -0.6 1,072,010 - +0.3
Or see this region's nucleotide sequence