Strain Fitness in Escherichia coli BL21 around ECD_00939

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00937 and ECD_00938 overlap by 4 nucleotidesECD_00938 and ECD_00939 are separated by 10 nucleotidesECD_00939 and ECD_00940 overlap by 4 nucleotidesECD_00940 and ECD_00941 overlap by 8 nucleotides ECD_00937: ECD_00937 - aliphatic sulfonate ABC transporter ATPase, at 998,366 to 999,133 _00937 ECD_00938: ECD_00938 - aliphatic sulfonate ABC transporter permease, at 999,130 to 999,921 _00938 ECD_00939: ECD_00939 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 999,932 to 1,001,077 _00939 ECD_00940: ECD_00940 - aliphatic sulfonate ABC transporter periplasmic binding protein, at 1,001,074 to 1,002,033 _00940 ECD_00941: ECD_00941 - NAD(P)H-dependent FMN reductase, at 1,002,026 to 1,002,601 _00941 Position (kb) 999 1000 1001 1002Strain fitness (log2 ratio) -2 -1 0 1at 999.084 kb on - strandat 999.128 kb on - strandat 999.238 kb on - strand, within ECD_00938at 999.441 kb on - strand, within ECD_00938at 999.504 kb on - strand, within ECD_00938at 999.958 kb on + strandat 1000.123 kb on - strand, within ECD_00939at 1000.251 kb on - strand, within ECD_00939at 1000.373 kb on - strand, within ECD_00939at 1000.935 kb on - strand, within ECD_00939at 1000.987 kb on - strandat 1001.078 kb on - strandat 1001.461 kb on + strand, within ECD_00940at 1001.550 kb on - strand, within ECD_00940at 1001.942 kb on - strandat 1001.943 kb on + strandat 1001.986 kb on - strandat 1002.028 kb on - strandat 1002.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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999,084 - -0.4
999,128 - -0.6
999,238 - ECD_00938 0.14 -0.4
999,441 - ECD_00938 0.39 -2.1
999,504 - ECD_00938 0.47 +0.5
999,958 + -0.7
1,000,123 - ECD_00939 0.17 -0.4
1,000,251 - ECD_00939 0.28 -0.7
1,000,373 - ECD_00939 0.38 +0.3
1,000,935 - ECD_00939 0.88 -1.1
1,000,987 - -0.4
1,001,078 - -0.4
1,001,461 + ECD_00940 0.40 -0.2
1,001,550 - ECD_00940 0.50 -1.7
1,001,942 - +0.5
1,001,943 + -0.3
1,001,986 - +0.2
1,002,028 - -0.3
1,002,028 - -0.7

Or see this region's nucleotide sequence