Strain Fitness in Escherichia coli BL21 around ECD_00937

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00936 and ECD_00937 are separated by 42 nucleotidesECD_00937 and ECD_00938 overlap by 4 nucleotidesECD_00938 and ECD_00939 are separated by 10 nucleotides ECD_00936: ECD_00936 - aminopeptidase N, at 995,711 to 998,323 _00936 ECD_00937: ECD_00937 - aliphatic sulfonate ABC transporter ATPase, at 998,366 to 999,133 _00937 ECD_00938: ECD_00938 - aliphatic sulfonate ABC transporter permease, at 999,130 to 999,921 _00938 ECD_00939: ECD_00939 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 999,932 to 1,001,077 _00939 Position (kb) 998 999 1000Strain fitness (log2 ratio) -2 -1 0 1at 997.433 kb on + strand, within ECD_00936at 997.433 kb on + strand, within ECD_00936at 997.648 kb on + strand, within ECD_00936at 997.649 kb on - strand, within ECD_00936at 997.837 kb on + strand, within ECD_00936at 997.951 kb on + strand, within ECD_00936at 998.053 kb on + strand, within ECD_00936at 998.294 kb on + strandat 998.304 kb on + strandat 998.577 kb on - strand, within ECD_00937at 998.578 kb on - strand, within ECD_00937at 998.582 kb on - strand, within ECD_00937at 998.637 kb on - strand, within ECD_00937at 999.084 kb on - strandat 999.128 kb on - strandat 999.238 kb on - strand, within ECD_00938at 999.441 kb on - strand, within ECD_00938at 999.504 kb on - strand, within ECD_00938at 999.958 kb on + strandat 1000.123 kb on - strand, within ECD_00939

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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997,433 + ECD_00936 0.66 -0.1
997,433 + ECD_00936 0.66 -1.4
997,648 + ECD_00936 0.74 +0.5
997,649 - ECD_00936 0.74 +1.0
997,837 + ECD_00936 0.81 +0.8
997,951 + ECD_00936 0.86 +0.2
998,053 + ECD_00936 0.90 +1.4
998,294 + -0.9
998,304 + -0.2
998,577 - ECD_00937 0.27 +0.3
998,578 - ECD_00937 0.28 -1.0
998,582 - ECD_00937 0.28 +0.3
998,637 - ECD_00937 0.35 -0.5
999,084 - -0.4
999,128 - -0.6
999,238 - ECD_00938 0.14 -0.4
999,441 - ECD_00938 0.39 -2.1
999,504 - ECD_00938 0.47 +0.5
999,958 + -0.7
1,000,123 - ECD_00939 0.17 -0.4

Or see this region's nucleotide sequence