Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00928 and ECD_00929 are separated by 260 nucleotides ECD_00929 and ECD_00930 are separated by 180 nucleotides ECD_00930 and ECD_00931 are separated by 26 nucleotides
ECD_00928: ECD_00928 - chromosome condensin MukBEF, ATPase and DNA-binding subunit, at 981,416 to 985,876
_00928
ECD_00929: ECD_00929 - murein L,D-transpeptidase, at 986,137 to 987,984
_00929
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
Position (kb) 986
987
988 Strain fitness (log2 ratio) -1
0
1
2 at 985.990 kb on - strand at 985.990 kb on - strand at 986.010 kb on - strand at 986.113 kb on + strand at 986.145 kb on + strand at 986.393 kb on - strand, within ECD_00929 at 986.429 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.664 kb on + strand, within ECD_00929 at 986.883 kb on + strand, within ECD_00929 at 986.910 kb on - strand, within ECD_00929 at 987.003 kb on + strand, within ECD_00929 at 987.085 kb on + strand, within ECD_00929 at 987.186 kb on - strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.441 kb on + strand, within ECD_00929 at 987.625 kb on - strand, within ECD_00929 at 987.823 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.991 kb on + strand at 988.017 kb on + strand at 988.151 kb on + strand at 988.347 kb on + strand, within ECD_00930 at 988.460 kb on + strand, within ECD_00930 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 985,990 - -0.3 985,990 - -1.7 986,010 - -0.7 986,113 + +1.3 986,145 + +1.4 986,393 - ECD_00929 0.14 +0.2 986,429 - ECD_00929 0.16 +1.5 986,663 - ECD_00929 0.28 -0.1 986,663 - ECD_00929 0.28 -0.5 986,664 + ECD_00929 0.29 -0.7 986,883 + ECD_00929 0.40 +1.3 986,910 - ECD_00929 0.42 +0.0 987,003 + ECD_00929 0.47 +1.1 987,085 + ECD_00929 0.51 +0.7 987,186 - ECD_00929 0.57 +1.0 987,298 + ECD_00929 0.63 -0.1 987,298 + ECD_00929 0.63 -0.2 987,441 + ECD_00929 0.71 +0.7 987,625 - ECD_00929 0.81 -0.5 987,823 + +1.5 987,922 + +1.2 987,922 + +1.8 987,922 + -1.5 987,991 + +0.3 988,017 + -0.8 988,151 + +0.6 988,347 + ECD_00930 0.33 -0.4 988,460 + ECD_00930 0.54 -1.0 988,657 + ECD_00930 0.90 +0.0 988,683 + +0.5 988,751 + +0.9 988,789 + +2.3
Or see this region's nucleotide sequence