Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00877 and ECD_00878 are separated by 11 nucleotides ECD_00878 and ECD_00879 are separated by 143 nucleotides
ECD_00877: ECD_00877 - HCP oxidoreductase, NADH-dependent, at 915,886 to 916,854
_00877
ECD_00878: ECD_00878 - hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases, at 916,866 to 918,518
_00878
ECD_00879: ECD_00879 - putative transporter, at 918,662 to 919,561
_00879
Position (kb) 916
917
918
919 Strain fitness (log2 ratio) -2
-1
0
1 at 915.879 kb on - strand at 915.985 kb on - strand, within ECD_00877 at 915.986 kb on + strand, within ECD_00877 at 915.987 kb on - strand, within ECD_00877 at 916.237 kb on - strand, within ECD_00877 at 916.276 kb on + strand, within ECD_00877 at 916.276 kb on + strand, within ECD_00877 at 916.372 kb on - strand, within ECD_00877 at 916.393 kb on - strand, within ECD_00877 at 916.543 kb on - strand, within ECD_00877 at 916.574 kb on + strand, within ECD_00877 at 916.652 kb on + strand, within ECD_00877 at 916.653 kb on - strand, within ECD_00877 at 916.685 kb on + strand, within ECD_00877 at 916.686 kb on - strand, within ECD_00877 at 916.751 kb on + strand, within ECD_00877 at 916.752 kb on - strand, within ECD_00877 at 917.145 kb on - strand, within ECD_00878 at 917.145 kb on - strand, within ECD_00878 at 917.145 kb on - strand, within ECD_00878 at 917.212 kb on + strand, within ECD_00878 at 917.279 kb on - strand, within ECD_00878 at 917.325 kb on - strand, within ECD_00878 at 917.543 kb on - strand, within ECD_00878 at 917.843 kb on - strand, within ECD_00878 at 917.981 kb on - strand, within ECD_00878 at 917.996 kb on - strand, within ECD_00878 at 918.026 kb on - strand, within ECD_00878 at 918.099 kb on - strand, within ECD_00878 at 918.408 kb on + strand at 918.664 kb on - strand at 918.755 kb on - strand, within ECD_00879 at 918.850 kb on + strand, within ECD_00879 at 918.851 kb on - strand, within ECD_00879 at 919.133 kb on + strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.337 kb on - strand, within ECD_00879 at 919.445 kb on - strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 915,879 - -0.6 915,985 - ECD_00877 0.10 -0.5 915,986 + ECD_00877 0.10 -0.6 915,987 - ECD_00877 0.10 -0.0 916,237 - ECD_00877 0.36 +0.1 916,276 + ECD_00877 0.40 +1.1 916,276 + ECD_00877 0.40 +0.4 916,372 - ECD_00877 0.50 +0.2 916,393 - ECD_00877 0.52 +0.1 916,543 - ECD_00877 0.68 -0.3 916,574 + ECD_00877 0.71 -0.4 916,652 + ECD_00877 0.79 -0.2 916,653 - ECD_00877 0.79 +0.6 916,685 + ECD_00877 0.82 -0.8 916,686 - ECD_00877 0.83 +0.1 916,751 + ECD_00877 0.89 +0.4 916,752 - ECD_00877 0.89 -0.2 917,145 - ECD_00878 0.17 +0.3 917,145 - ECD_00878 0.17 -0.1 917,145 - ECD_00878 0.17 +1.0 917,212 + ECD_00878 0.21 -0.4 917,279 - ECD_00878 0.25 +0.5 917,325 - ECD_00878 0.28 -0.6 917,543 - ECD_00878 0.41 +0.9 917,843 - ECD_00878 0.59 -1.1 917,981 - ECD_00878 0.67 -0.3 917,996 - ECD_00878 0.68 -0.6 918,026 - ECD_00878 0.70 -1.6 918,099 - ECD_00878 0.75 -0.1 918,408 + +1.6 918,664 - +0.1 918,755 - ECD_00879 0.10 +0.2 918,850 + ECD_00879 0.21 +0.5 918,851 - ECD_00879 0.21 +0.8 919,133 + ECD_00879 0.52 -0.7 919,176 - ECD_00879 0.57 +0.5 919,176 - ECD_00879 0.57 -1.3 919,176 - ECD_00879 0.57 +0.7 919,337 - ECD_00879 0.75 -2.1 919,445 - ECD_00879 0.87 +0.2 919,466 + ECD_00879 0.89 -2.3 919,466 + ECD_00879 0.89 -0.9
Or see this region's nucleotide sequence