Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00832 and ECD_00833 overlap by 4 nucleotides ECD_00833 and ECD_00834 are separated by 142 nucleotides ECD_00834 and ECD_00835 overlap by 7 nucleotides
ECD_00832: ECD_00832 - putative capsid portal protein, at 879,955 to 880,983
_00832
ECD_00833: ECD_00833 - Terminase, ATPase subunit, at 880,980 to 882,746
_00833
ECD_00834: ECD_00834 - putative capsid scaffolding protein, at 882,889 to 883,641
_00834
ECD_00835: ECD_00835 - hypothetical protein, at 883,635 to 883,781
_00835
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -1
0
1
2 at 880.346 kb on + strand, within ECD_00832 at 880.346 kb on + strand, within ECD_00832 at 880.346 kb on + strand, within ECD_00832 at 880.347 kb on - strand, within ECD_00832 at 880.382 kb on + strand, within ECD_00832 at 880.539 kb on - strand, within ECD_00832 at 880.558 kb on - strand, within ECD_00832 at 880.561 kb on + strand, within ECD_00832 at 880.562 kb on - strand, within ECD_00832 at 880.721 kb on + strand, within ECD_00832 at 880.721 kb on + strand, within ECD_00832 at 880.810 kb on + strand, within ECD_00832 at 881.241 kb on - strand, within ECD_00833 at 881.435 kb on + strand, within ECD_00833 at 881.436 kb on - strand, within ECD_00833 at 881.989 kb on + strand, within ECD_00833 at 881.989 kb on + strand, within ECD_00833 at 882.052 kb on + strand, within ECD_00833 at 882.052 kb on + strand, within ECD_00833 at 882.131 kb on - strand, within ECD_00833 at 882.226 kb on + strand, within ECD_00833 at 882.449 kb on + strand, within ECD_00833 at 882.989 kb on - strand, within ECD_00834 at 883.039 kb on + strand, within ECD_00834 at 883.039 kb on + strand, within ECD_00834 at 883.135 kb on + strand, within ECD_00834 at 883.495 kb on - strand, within ECD_00834 at 883.625 kb on + strand at 883.626 kb on - strand at 883.699 kb on - strand, within ECD_00835 at 883.702 kb on + strand, within ECD_00835
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 880,346 + ECD_00832 0.38 +1.7 880,346 + ECD_00832 0.38 +0.9 880,346 + ECD_00832 0.38 +0.3 880,347 - ECD_00832 0.38 +0.4 880,382 + ECD_00832 0.41 +1.4 880,539 - ECD_00832 0.57 +1.2 880,558 - ECD_00832 0.59 +1.4 880,561 + ECD_00832 0.59 +0.4 880,562 - ECD_00832 0.59 -0.6 880,721 + ECD_00832 0.74 -0.1 880,721 + ECD_00832 0.74 -0.2 880,810 + ECD_00832 0.83 +0.8 881,241 - ECD_00833 0.15 -1.3 881,435 + ECD_00833 0.26 +0.6 881,436 - ECD_00833 0.26 -0.9 881,989 + ECD_00833 0.57 -0.3 881,989 + ECD_00833 0.57 -1.3 882,052 + ECD_00833 0.61 -0.2 882,052 + ECD_00833 0.61 -1.6 882,131 - ECD_00833 0.65 +0.0 882,226 + ECD_00833 0.71 -1.4 882,449 + ECD_00833 0.83 -0.7 882,989 - ECD_00834 0.13 -0.6 883,039 + ECD_00834 0.20 +0.7 883,039 + ECD_00834 0.20 -1.0 883,135 + ECD_00834 0.33 +2.1 883,495 - ECD_00834 0.80 -1.3 883,625 + -0.0 883,626 - +0.7 883,699 - ECD_00835 0.44 +0.7 883,702 + ECD_00835 0.46 -0.3
Or see this region's nucleotide sequence