Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00816 and ECD_00817 are separated by 79 nucleotides ECD_00817 and ECD_00818 are separated by 131 nucleotides ECD_00818 and ECD_00819 are separated by 32 nucleotides
ECD_00816: ECD_00816 - hypothetical protein, at 873,677 to 873,829
_00816
ECD_00817: ECD_00817 - Repressor protein, at 873,909 to 874,472
_00817
ECD_00818: ECD_00818 - hypothetical protein, at 874,604 to 874,825
_00818
ECD_00819: ECD_00819 - hypothetical protein, at 874,858 to 876,303
_00819
Position (kb) 874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 873.830 kb on - strand at 873.830 kb on - strand at 873.834 kb on - strand at 874.584 kb on + strand at 874.631 kb on - strand, within ECD_00818 at 874.649 kb on - strand, within ECD_00818 at 875.006 kb on + strand, within ECD_00819 at 875.063 kb on + strand, within ECD_00819 at 875.140 kb on + strand, within ECD_00819 at 875.141 kb on - strand, within ECD_00819 at 875.338 kb on - strand, within ECD_00819 at 875.381 kb on - strand, within ECD_00819 at 875.382 kb on + strand, within ECD_00819 at 875.476 kb on + strand, within ECD_00819 at 875.477 kb on - strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.680 kb on + strand, within ECD_00819 at 875.788 kb on - strand, within ECD_00819
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 873,830 - +1.3 873,830 - -1.0 873,834 - +0.2 874,584 + +0.1 874,631 - ECD_00818 0.12 +0.7 874,649 - ECD_00818 0.20 -1.5 875,006 + ECD_00819 0.10 -1.1 875,063 + ECD_00819 0.14 +0.4 875,140 + ECD_00819 0.20 -1.0 875,141 - ECD_00819 0.20 +0.4 875,338 - ECD_00819 0.33 -2.0 875,381 - ECD_00819 0.36 +0.7 875,382 + ECD_00819 0.36 +1.8 875,476 + ECD_00819 0.43 +0.4 875,477 - ECD_00819 0.43 -1.7 875,680 + ECD_00819 0.57 +1.2 875,680 + ECD_00819 0.57 +0.7 875,680 + ECD_00819 0.57 -1.1 875,788 - ECD_00819 0.64 -0.9
Or see this region's nucleotide sequence