Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00626 and ECD_00627 are separated by 89 nucleotides ECD_00627 and ECD_00628 overlap by 4 nucleotides ECD_00628 and ECD_00629 are separated by 113 nucleotides
ECD_00626: ECD_00626 - putative ion transport, at 650,780 to 651,658
_00626
ECD_00627: ECD_00627 - ssRNA-specific endoribonuclease; 16S rRNA 3, at 651,748 to 652,215
_00627
ECD_00628: ECD_00628 - heat shock protein, putative NTPase; PhoH-like protein, at 652,212 to 653,291
_00628
ECD_00629: ECD_00629 - tRNA-i(6)A37 methylthiotransferase, at 653,405 to 654,829
_00629
Position (kb) 652
653
654 Strain fitness (log2 ratio) -1
0
1
2
3 at 651.243 kb on - strand, within ECD_00626 at 651.500 kb on - strand, within ECD_00626 at 651.624 kb on - strand at 651.635 kb on - strand at 651.635 kb on - strand at 651.635 kb on - strand at 651.750 kb on - strand at 651.750 kb on - strand at 652.402 kb on - strand, within ECD_00628 at 652.402 kb on - strand, within ECD_00628 at 652.413 kb on - strand, within ECD_00628 at 652.416 kb on - strand, within ECD_00628 at 652.569 kb on - strand, within ECD_00628 at 652.571 kb on - strand, within ECD_00628 at 652.655 kb on - strand, within ECD_00628 at 652.805 kb on - strand, within ECD_00628 at 652.805 kb on - strand, within ECD_00628 at 652.871 kb on - strand, within ECD_00628 at 653.054 kb on - strand, within ECD_00628 at 653.054 kb on - strand, within ECD_00628 at 653.245 kb on - strand at 653.271 kb on - strand at 653.271 kb on - strand at 653.271 kb on - strand at 653.406 kb on + strand at 653.416 kb on - strand at 653.588 kb on - strand, within ECD_00629 at 653.657 kb on - strand, within ECD_00629 at 653.725 kb on + strand, within ECD_00629 at 653.726 kb on - strand, within ECD_00629 at 653.740 kb on + strand, within ECD_00629 at 653.741 kb on - strand, within ECD_00629 at 653.821 kb on + strand, within ECD_00629 at 653.822 kb on - strand, within ECD_00629 at 653.822 kb on - strand, within ECD_00629 at 654.088 kb on + strand, within ECD_00629
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 651,243 - ECD_00626 0.53 -1.5 651,500 - ECD_00626 0.82 -0.8 651,624 - -1.7 651,635 - -0.5 651,635 - +0.5 651,635 - -1.0 651,750 - +1.4 651,750 - +0.1 652,402 - ECD_00628 0.18 +1.0 652,402 - ECD_00628 0.18 +1.6 652,413 - ECD_00628 0.19 +0.9 652,416 - ECD_00628 0.19 +0.0 652,569 - ECD_00628 0.33 +2.1 652,571 - ECD_00628 0.33 +1.3 652,655 - ECD_00628 0.41 +0.7 652,805 - ECD_00628 0.55 +0.9 652,805 - ECD_00628 0.55 +1.0 652,871 - ECD_00628 0.61 -0.1 653,054 - ECD_00628 0.78 +0.6 653,054 - ECD_00628 0.78 +1.3 653,245 - +3.1 653,271 - -0.1 653,271 - +0.3 653,271 - +0.1 653,406 + +0.6 653,416 - +1.8 653,588 - ECD_00629 0.13 +1.0 653,657 - ECD_00629 0.18 +2.2 653,725 + ECD_00629 0.22 +2.2 653,726 - ECD_00629 0.23 +1.1 653,740 + ECD_00629 0.24 +1.2 653,741 - ECD_00629 0.24 -0.5 653,821 + ECD_00629 0.29 +0.1 653,822 - ECD_00629 0.29 -1.1 653,822 - ECD_00629 0.29 +1.3 654,088 + ECD_00629 0.48 +1.2
Or see this region's nucleotide sequence