Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00601 and ECD_00602 are separated by 139 nucleotides ECD_00602 and ECD_00603 are separated by 10 nucleotides
ECD_00601: ECD_00601 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5), at 623,114 to 624,325
_00601
ECD_00602: ECD_00602 - septal ring protein, suppressor of prc, minor lipoprotein, at 624,465 to 625,553
_00602
ECD_00603: ECD_00603 - cell wall shape-determining protein, at 625,564 to 626,676
_00603
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 623.712 kb on - strand, within ECD_00601 at 623.763 kb on + strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.923 kb on + strand, within ECD_00601 at 624.085 kb on - strand, within ECD_00601 at 624.165 kb on + strand, within ECD_00601 at 624.180 kb on + strand, within ECD_00601 at 624.217 kb on + strand at 624.256 kb on + strand at 624.257 kb on - strand at 624.301 kb on + strand at 624.336 kb on - strand at 624.336 kb on - strand at 624.372 kb on + strand at 624.373 kb on - strand at 624.373 kb on - strand at 624.374 kb on + strand at 624.375 kb on - strand at 624.461 kb on + strand at 624.462 kb on - strand at 624.462 kb on - strand at 624.483 kb on - strand at 624.528 kb on - strand at 624.528 kb on - strand at 624.635 kb on - strand, within ECD_00602 at 624.761 kb on + strand, within ECD_00602 at 624.928 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.011 kb on - strand, within ECD_00602 at 625.086 kb on - strand, within ECD_00602 at 625.372 kb on + strand, within ECD_00602 at 625.373 kb on - strand, within ECD_00602 at 625.435 kb on - strand, within ECD_00602 at 625.446 kb on - strand at 625.465 kb on - strand at 625.500 kb on - strand at 625.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 623,712 - ECD_00601 0.49 -0.5 623,763 + ECD_00601 0.54 -0.4 623,790 - ECD_00601 0.56 +1.6 623,790 - ECD_00601 0.56 +0.6 623,833 - ECD_00601 0.59 -1.2 623,833 - ECD_00601 0.59 +0.1 623,833 - ECD_00601 0.59 +1.4 623,923 + ECD_00601 0.67 +0.2 624,085 - ECD_00601 0.80 +1.0 624,165 + ECD_00601 0.87 -0.3 624,180 + ECD_00601 0.88 -0.7 624,217 + -1.1 624,256 + +0.1 624,257 - -2.3 624,301 + -0.2 624,336 - +0.2 624,336 - -0.2 624,372 + +5.1 624,373 - -2.1 624,373 - -0.5 624,374 + -1.0 624,375 - -0.8 624,461 + +0.7 624,462 - -0.6 624,462 - +0.3 624,483 - +2.2 624,528 - +0.5 624,528 - +0.5 624,635 - ECD_00602 0.16 -0.7 624,761 + ECD_00602 0.27 +0.3 624,928 - ECD_00602 0.43 -0.3 625,002 - ECD_00602 0.49 +0.9 625,002 - ECD_00602 0.49 -0.1 625,002 - ECD_00602 0.49 +4.5 625,002 - ECD_00602 0.49 +0.8 625,011 - ECD_00602 0.50 -1.5 625,086 - ECD_00602 0.57 +0.2 625,372 + ECD_00602 0.83 +1.3 625,373 - ECD_00602 0.83 +0.9 625,435 - ECD_00602 0.89 +0.2 625,446 - +0.9 625,465 - -0.0 625,500 - -0.2 625,500 - +0.7
Or see this region's nucleotide sequence