Strain Fitness in Escherichia coli BL21 around ECD_00480

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00479 and ECD_00480 are separated by 470 nucleotidesECD_00480 and ECD_00481 are separated by 219 nucleotidesECD_00481 and ECD_00482 are separated by 30 nucleotides ECD_00479: ECD_00479 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 525,962 to 526,828 _00479 ECD_00480: ECD_00480 - FimA-like protein, at 527,299 to 527,841 _00480 ECD_00481: ECD_00481 - putative periplasmic pilus chaperone, at 528,061 to 528,753 _00481 ECD_00482: ECD_00482 - putative outer membrane export usher protein, at 528,784 to 531,393 _00482 Position (kb) 527 528Strain fitness (log2 ratio) -2 -1 0 1at 526.851 kb on - strandat 527.430 kb on + strand, within ECD_00480at 527.431 kb on - strand, within ECD_00480at 527.635 kb on - strand, within ECD_00480at 527.707 kb on - strand, within ECD_00480at 528.162 kb on + strand, within ECD_00481at 528.553 kb on - strand, within ECD_00481

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
526,851 - -0.5
527,430 + ECD_00480 0.24 -1.7
527,431 - ECD_00480 0.24 -1.9
527,635 - ECD_00480 0.62 -1.3
527,707 - ECD_00480 0.75 +0.1
528,162 + ECD_00481 0.15 +0.5
528,553 - ECD_00481 0.71 +0.2

Or see this region's nucleotide sequence