Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00413 and ECD_00414 are separated by 22 nucleotides ECD_00414 and ECD_00415 are separated by 141 nucleotides ECD_00415 and ECD_00416 are separated by 127 nucleotides
ECD_00413: ECD_00413 - multidrug efflux system protein, at 450,300 to 453,449
_00413
ECD_00414: ECD_00414 - multidrug efflux system, at 453,472 to 454,665
_00414
ECD_00415: ECD_00415 - transcriptional repressor, at 454,807 to 455,454
_00415
ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944
_00416
Position (kb) 453
454
455 Strain fitness (log2 ratio) -1
0
1
2
3 at 452.627 kb on - strand, within ECD_00413 at 452.748 kb on - strand, within ECD_00413 at 452.905 kb on + strand, within ECD_00413 at 452.981 kb on - strand, within ECD_00413 at 453.159 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.221 kb on - strand at 453.246 kb on - strand at 453.342 kb on - strand at 453.455 kb on - strand at 453.468 kb on + strand at 453.474 kb on - strand at 453.474 kb on - strand at 453.584 kb on - strand at 453.584 kb on - strand at 453.584 kb on - strand at 453.584 kb on - strand at 453.584 kb on - strand at 453.692 kb on - strand, within ECD_00414 at 453.847 kb on - strand, within ECD_00414 at 454.028 kb on + strand, within ECD_00414 at 454.028 kb on + strand, within ECD_00414 at 454.029 kb on - strand, within ECD_00414 at 454.082 kb on - strand, within ECD_00414 at 454.082 kb on - strand, within ECD_00414 at 454.111 kb on - strand, within ECD_00414 at 454.111 kb on - strand, within ECD_00414 at 454.148 kb on + strand, within ECD_00414 at 454.239 kb on - strand, within ECD_00414 at 454.239 kb on - strand, within ECD_00414 at 454.239 kb on - strand, within ECD_00414 at 454.256 kb on + strand, within ECD_00414 at 454.352 kb on + strand, within ECD_00414 at 454.353 kb on - strand, within ECD_00414 at 454.353 kb on - strand, within ECD_00414 at 454.353 kb on - strand, within ECD_00414 at 454.365 kb on - strand, within ECD_00414 at 454.365 kb on - strand, within ECD_00414 at 454.538 kb on - strand, within ECD_00414 at 454.538 kb on - strand, within ECD_00414 at 454.541 kb on - strand, within ECD_00414 at 454.669 kb on + strand at 454.670 kb on - strand at 454.670 kb on - strand at 454.670 kb on - strand at 454.713 kb on + strand at 454.714 kb on - strand at 454.734 kb on + strand at 454.735 kb on - strand at 454.735 kb on - strand at 454.736 kb on + strand at 454.737 kb on - strand at 454.759 kb on + strand at 454.759 kb on + strand at 454.792 kb on + strand at 454.806 kb on + strand at 454.807 kb on - strand at 455.024 kb on + strand, within ECD_00415 at 455.081 kb on + strand, within ECD_00415 at 455.084 kb on + strand, within ECD_00415 at 455.084 kb on + strand, within ECD_00415 at 455.142 kb on + strand, within ECD_00415 at 455.142 kb on + strand, within ECD_00415 at 455.142 kb on + strand, within ECD_00415 at 455.199 kb on + strand, within ECD_00415 at 455.200 kb on - strand, within ECD_00415 at 455.250 kb on + strand, within ECD_00415 at 455.316 kb on + strand, within ECD_00415 at 455.410 kb on + strand at 455.411 kb on - strand at 455.588 kb on - strand at 455.588 kb on - strand at 455.600 kb on + strand at 455.635 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 452,627 - ECD_00413 0.74 +0.6 452,748 - ECD_00413 0.78 +0.3 452,905 + ECD_00413 0.83 -0.6 452,981 - ECD_00413 0.85 +0.6 453,159 - +1.5 453,221 - -0.8 453,221 - +2.5 453,221 - +0.4 453,221 - +0.9 453,221 - -0.5 453,221 - +0.3 453,221 - +0.5 453,221 - +1.9 453,246 - +1.6 453,342 - +0.9 453,455 - +0.7 453,468 + -0.8 453,474 - +0.7 453,474 - +1.9 453,584 - +0.9 453,584 - +1.6 453,584 - +1.6 453,584 - +2.3 453,584 - +2.2 453,692 - ECD_00414 0.18 +2.8 453,847 - ECD_00414 0.31 +0.3 454,028 + ECD_00414 0.47 +1.3 454,028 + ECD_00414 0.47 +0.3 454,029 - ECD_00414 0.47 +0.3 454,082 - ECD_00414 0.51 +1.9 454,082 - ECD_00414 0.51 +0.5 454,111 - ECD_00414 0.54 +1.5 454,111 - ECD_00414 0.54 +1.3 454,148 + ECD_00414 0.57 -0.0 454,239 - ECD_00414 0.64 +0.5 454,239 - ECD_00414 0.64 +0.4 454,239 - ECD_00414 0.64 +1.2 454,256 + ECD_00414 0.66 +0.5 454,352 + ECD_00414 0.74 +1.5 454,353 - ECD_00414 0.74 +1.5 454,353 - ECD_00414 0.74 -0.6 454,353 - ECD_00414 0.74 +0.7 454,365 - ECD_00414 0.75 +1.1 454,365 - ECD_00414 0.75 -0.0 454,538 - ECD_00414 0.89 -0.9 454,538 - ECD_00414 0.89 -0.6 454,541 - ECD_00414 0.90 +1.5 454,669 + +0.5 454,670 - +0.6 454,670 - -0.7 454,670 - +0.0 454,713 + +0.1 454,714 - +1.5 454,734 + +0.5 454,735 - +1.7 454,735 - +2.1 454,736 + +0.4 454,737 - +0.9 454,759 + -0.3 454,759 + +1.0 454,792 + +0.0 454,806 + -1.2 454,807 - -0.2 455,024 + ECD_00415 0.33 +2.4 455,081 + ECD_00415 0.42 +2.8 455,084 + ECD_00415 0.43 +2.3 455,084 + ECD_00415 0.43 +3.1 455,142 + ECD_00415 0.52 +2.5 455,142 + ECD_00415 0.52 +2.2 455,142 + ECD_00415 0.52 +2.8 455,199 + ECD_00415 0.60 +2.5 455,200 - ECD_00415 0.61 +3.1 455,250 + ECD_00415 0.68 +2.4 455,316 + ECD_00415 0.79 +2.6 455,410 + +2.6 455,411 - +3.6 455,588 - -0.3 455,588 - +0.5 455,600 + -0.1 455,635 + -0.8
Or see this region's nucleotide sequence