Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00368 and ECD_00369 are separated by 24 nucleotides ECD_00369 and ECD_00370 overlap by 1 nucleotides ECD_00370 and ECD_00371 are separated by 205 nucleotides
ECD_00368: ECD_00368 - 1-deoxyxylulose-5-phosphate synthase, thiamine triphosphate-binding, FAD-requiring, at 403,716 to 405,578
_00368
ECD_00369: ECD_00369 - geranyltranstransferase, at 405,603 to 406,502
_00369
ECD_00370: ECD_00370 - exonuclease VII small subunit, at 406,502 to 406,744
_00370
ECD_00371: ECD_00371 - tRNA s(4)U8 sulfurtransferase, at 406,950 to 408,398
_00371
Position (kb) 406
407 Strain fitness (log2 ratio) -1
0
1
2 at 406.587 kb on - strand, within ECD_00370 at 406.811 kb on - strand at 406.824 kb on - strand at 406.859 kb on + strand at 406.900 kb on - strand at 406.911 kb on + strand at 406.911 kb on + strand at 406.912 kb on - strand at 406.912 kb on - strand at 406.912 kb on - strand at 406.912 kb on - strand at 406.922 kb on + strand at 406.922 kb on + strand at 407.018 kb on - strand at 407.059 kb on - strand at 407.174 kb on + strand, within ECD_00371 at 407.328 kb on + strand, within ECD_00371 at 407.435 kb on + strand, within ECD_00371 at 407.532 kb on + strand, within ECD_00371 at 407.532 kb on + strand, within ECD_00371 at 407.532 kb on + strand, within ECD_00371 at 407.534 kb on + strand, within ECD_00371 at 407.535 kb on - strand, within ECD_00371 at 407.535 kb on - strand, within ECD_00371 at 407.566 kb on - strand, within ECD_00371
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 406,587 - ECD_00370 0.35 +0.7 406,811 - +0.3 406,824 - +0.2 406,859 + +0.6 406,900 - +2.1 406,911 + +0.0 406,911 + -0.2 406,912 - +0.8 406,912 - +2.2 406,912 - +1.8 406,912 - +0.4 406,922 + -0.4 406,922 + -0.8 407,018 - -0.6 407,059 - +1.1 407,174 + ECD_00371 0.15 +1.4 407,328 + ECD_00371 0.26 +0.1 407,435 + ECD_00371 0.33 +0.9 407,532 + ECD_00371 0.40 +1.7 407,532 + ECD_00371 0.40 +2.1 407,532 + ECD_00371 0.40 +1.3 407,534 + ECD_00371 0.40 +1.3 407,535 - ECD_00371 0.40 +2.4 407,535 - ECD_00371 0.40 -0.5 407,566 - ECD_00371 0.43 +1.4
Or see this region's nucleotide sequence