Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00289 and ECD_00290 are separated by 235 nucleotides ECD_00290 and ECD_00291 overlap by 11 nucleotides
ECD_00289: ECD_00289 - propionate--CoA ligase, at 322,335 to 324,221
_00289
ECD_00290: ECD_00290 - cytosine transporter, at 324,457 to 325,716
_00290
ECD_00291: ECD_00291 - cytosine/isoguanine deaminase, at 325,706 to 326,989
_00291
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 323.462 kb on + strand, within ECD_00289 at 323.491 kb on - strand, within ECD_00289 at 323.583 kb on + strand, within ECD_00289 at 323.583 kb on + strand, within ECD_00289 at 323.583 kb on + strand, within ECD_00289 at 323.584 kb on - strand, within ECD_00289 at 323.584 kb on - strand, within ECD_00289 at 323.584 kb on - strand, within ECD_00289 at 323.584 kb on - strand, within ECD_00289 at 323.584 kb on - strand, within ECD_00289 at 323.590 kb on - strand, within ECD_00289 at 323.685 kb on - strand, within ECD_00289 at 323.754 kb on + strand, within ECD_00289 at 323.824 kb on + strand, within ECD_00289 at 323.824 kb on + strand, within ECD_00289 at 323.824 kb on + strand, within ECD_00289 at 323.873 kb on + strand, within ECD_00289 at 323.873 kb on + strand, within ECD_00289 at 324.220 kb on - strand at 324.564 kb on + strand at 324.564 kb on + strand at 324.565 kb on - strand at 324.565 kb on - strand at 324.598 kb on - strand, within ECD_00290 at 324.598 kb on - strand, within ECD_00290 at 324.598 kb on - strand, within ECD_00290 at 324.598 kb on - strand, within ECD_00290 at 324.633 kb on + strand, within ECD_00290 at 324.652 kb on + strand, within ECD_00290 at 324.841 kb on - strand, within ECD_00290 at 324.867 kb on - strand, within ECD_00290 at 325.001 kb on + strand, within ECD_00290 at 325.282 kb on - strand, within ECD_00290 at 325.310 kb on - strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.411 kb on - strand, within ECD_00290 at 325.449 kb on + strand, within ECD_00290 at 325.449 kb on + strand, within ECD_00290 at 325.450 kb on - strand, within ECD_00290 at 325.450 kb on - strand, within ECD_00290 at 325.483 kb on + strand, within ECD_00290 at 325.622 kb on + strand at 325.639 kb on + strand at 325.830 kb on + strand at 325.892 kb on - strand, within ECD_00291 at 326.226 kb on + strand, within ECD_00291 at 326.244 kb on + strand, within ECD_00291 at 326.283 kb on - strand, within ECD_00291 at 326.302 kb on + strand, within ECD_00291 at 326.466 kb on - strand, within ECD_00291 at 326.477 kb on + strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 323,462 + ECD_00289 0.60 -0.4 323,491 - ECD_00289 0.61 +0.2 323,583 + ECD_00289 0.66 +0.3 323,583 + ECD_00289 0.66 +0.2 323,583 + ECD_00289 0.66 +0.2 323,584 - ECD_00289 0.66 +0.2 323,584 - ECD_00289 0.66 +0.6 323,584 - ECD_00289 0.66 +0.4 323,584 - ECD_00289 0.66 +0.4 323,584 - ECD_00289 0.66 -1.0 323,590 - ECD_00289 0.67 -1.3 323,685 - ECD_00289 0.72 +0.5 323,754 + ECD_00289 0.75 +0.6 323,824 + ECD_00289 0.79 +2.0 323,824 + ECD_00289 0.79 +1.4 323,824 + ECD_00289 0.79 -0.6 323,873 + ECD_00289 0.82 +1.9 323,873 + ECD_00289 0.82 +0.1 324,220 - +0.2 324,564 + -0.5 324,564 + +5.3 324,565 - -1.6 324,565 - +0.1 324,598 - ECD_00290 0.11 -0.4 324,598 - ECD_00290 0.11 +0.1 324,598 - ECD_00290 0.11 +0.8 324,598 - ECD_00290 0.11 +1.6 324,633 + ECD_00290 0.14 +0.2 324,652 + ECD_00290 0.15 +0.2 324,841 - ECD_00290 0.30 +0.6 324,867 - ECD_00290 0.33 +0.4 325,001 + ECD_00290 0.43 -0.7 325,282 - ECD_00290 0.65 -0.8 325,310 - ECD_00290 0.68 +0.6 325,408 + ECD_00290 0.75 -0.3 325,408 + ECD_00290 0.75 +0.3 325,408 + ECD_00290 0.75 +0.3 325,408 + ECD_00290 0.75 -2.1 325,411 - ECD_00290 0.76 -0.4 325,449 + ECD_00290 0.79 +0.9 325,449 + ECD_00290 0.79 -0.2 325,450 - ECD_00290 0.79 +5.0 325,450 - ECD_00290 0.79 +0.6 325,483 + ECD_00290 0.81 +0.7 325,622 + +0.3 325,639 + -0.3 325,830 + +1.7 325,892 - ECD_00291 0.14 -0.1 326,226 + ECD_00291 0.40 +0.5 326,244 + ECD_00291 0.42 -0.1 326,283 - ECD_00291 0.45 +0.9 326,302 + ECD_00291 0.46 +0.0 326,466 - ECD_00291 0.59 -1.1 326,477 + ECD_00291 0.60 -0.9 326,478 - ECD_00291 0.60 -0.4 326,478 - ECD_00291 0.60 +0.8 326,479 + ECD_00291 0.60 -0.0 326,479 + ECD_00291 0.60 +0.6
Or see this region's nucleotide sequence