Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00204 and ECD_00205 are separated by 71 nucleotides ECD_00205 and ECD_00206 are separated by 33 nucleotides ECD_00206 and ECD_00207 overlap by 4 nucleotides ECD_00207 and ECD_00208 are separated by 64 nucleotides
ECD_00204: ECD_00204 - putative membrane-bound lytic murein transglycosylase D, at 235,524 to 236,882
_00204
ECD_00205: ECD_00205 - hydroxyacylglutathione hydrolase, at 236,954 to 237,709
_00205
ECD_00206: ECD_00206 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 237,743 to 238,465
_00206
ECD_00207: ECD_00207 - ribonuclease HI, at 238,462 to 238,929
_00207
ECD_00208: ECD_00208 - DNA polymerase III epsilon subunit, at 238,994 to 239,725
_00208
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1 at 236.895 kb on - strand at 236.920 kb on - strand at 236.963 kb on - strand at 237.155 kb on + strand, within ECD_00205 at 237.245 kb on + strand, within ECD_00205 at 237.446 kb on + strand, within ECD_00205 at 237.486 kb on + strand, within ECD_00205 at 237.486 kb on + strand, within ECD_00205 at 237.564 kb on - strand, within ECD_00205 at 237.584 kb on - strand, within ECD_00205 at 237.673 kb on - strand at 237.673 kb on - strand at 237.673 kb on - strand at 237.694 kb on + strand at 237.701 kb on - strand at 237.701 kb on - strand at 237.701 kb on - strand at 237.715 kb on - strand at 237.715 kb on - strand at 237.721 kb on + strand at 238.036 kb on + strand, within ECD_00206 at 238.036 kb on + strand, within ECD_00206 at 238.036 kb on + strand, within ECD_00206 at 238.036 kb on + strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.037 kb on - strand, within ECD_00206 at 238.135 kb on + strand, within ECD_00206 at 238.168 kb on - strand, within ECD_00206 at 238.205 kb on - strand, within ECD_00206 at 238.306 kb on - strand, within ECD_00206 at 238.338 kb on + strand, within ECD_00206 at 238.339 kb on - strand, within ECD_00206 at 238.345 kb on + strand, within ECD_00206 at 238.346 kb on - strand, within ECD_00206 at 238.346 kb on - strand, within ECD_00206 at 238.367 kb on - strand, within ECD_00206 at 238.451 kb on - strand at 238.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 236,895 - -0.5 236,920 - +0.8 236,963 - -0.2 237,155 + ECD_00205 0.27 +0.7 237,245 + ECD_00205 0.38 +0.1 237,446 + ECD_00205 0.65 +0.6 237,486 + ECD_00205 0.70 -0.6 237,486 + ECD_00205 0.70 +0.8 237,564 - ECD_00205 0.81 -0.2 237,584 - ECD_00205 0.83 +0.0 237,673 - +0.1 237,673 - -0.1 237,673 - -0.6 237,694 + +0.0 237,701 - -1.2 237,701 - -0.6 237,701 - +0.3 237,715 - +0.4 237,715 - +0.1 237,721 + -0.3 238,036 + ECD_00206 0.41 -0.2 238,036 + ECD_00206 0.41 -2.4 238,036 + ECD_00206 0.41 -0.0 238,036 + ECD_00206 0.41 -1.7 238,037 - ECD_00206 0.41 -0.7 238,037 - ECD_00206 0.41 +1.5 238,037 - ECD_00206 0.41 +0.1 238,037 - ECD_00206 0.41 -1.2 238,037 - ECD_00206 0.41 -1.6 238,037 - ECD_00206 0.41 -0.7 238,037 - ECD_00206 0.41 -1.7 238,135 + ECD_00206 0.54 -0.6 238,168 - ECD_00206 0.59 +0.3 238,205 - ECD_00206 0.64 -0.6 238,306 - ECD_00206 0.78 -1.1 238,338 + ECD_00206 0.82 -1.4 238,339 - ECD_00206 0.82 -0.5 238,345 + ECD_00206 0.83 -0.9 238,346 - ECD_00206 0.83 +0.2 238,346 - ECD_00206 0.83 -0.6 238,367 - ECD_00206 0.86 -1.5 238,451 - +0.9 238,982 + -1.5
Or see this region's nucleotide sequence