Strain Fitness in Escherichia coli BL21 around ECD_00160

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00159 and ECD_00160 are separated by 129 nucleotidesECD_00160 and ECD_00161 are separated by 154 nucleotides ECD_00159: ECD_00159 - deoxyguanosine triphosphate triphosphohydrolase, at 182,080 to 183,597 _00159 ECD_00160: ECD_00160 - serine endoprotease (protease Do), membrane-associated, at 183,727 to 185,151 _00160 ECD_00161: ECD_00161 - carbohydrate diacid regulon transcriptional regulator; autoregulator, at 185,306 to 186,463 _00161 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 182.762 kb on - strand, within ECD_00159at 182.766 kb on - strand, within ECD_00159at 182.804 kb on - strand, within ECD_00159at 182.894 kb on - strand, within ECD_00159at 183.142 kb on - strand, within ECD_00159at 183.320 kb on - strand, within ECD_00159at 183.503 kb on - strandat 183.505 kb on + strandat 183.505 kb on + strandat 183.529 kb on + strandat 183.530 kb on - strandat 183.531 kb on + strandat 183.554 kb on - strandat 183.569 kb on - strandat 183.588 kb on - strandat 183.725 kb on - strandat 183.725 kb on - strandat 183.782 kb on + strandat 183.896 kb on + strand, within ECD_00160at 183.896 kb on + strand, within ECD_00160at 183.896 kb on + strand, within ECD_00160at 183.896 kb on + strand, within ECD_00160at 183.896 kb on + strand, within ECD_00160at 183.896 kb on + strand, within ECD_00160at 183.919 kb on - strand, within ECD_00160at 184.099 kb on + strand, within ECD_00160at 184.100 kb on - strand, within ECD_00160at 184.100 kb on - strand, within ECD_00160at 184.100 kb on - strand, within ECD_00160at 184.100 kb on - strand, within ECD_00160at 184.143 kb on + strand, within ECD_00160at 184.254 kb on + strand, within ECD_00160at 184.254 kb on + strand, within ECD_00160at 184.291 kb on + strand, within ECD_00160at 184.291 kb on + strand, within ECD_00160at 184.292 kb on - strand, within ECD_00160at 184.527 kb on + strand, within ECD_00160at 184.673 kb on + strand, within ECD_00160at 184.750 kb on - strand, within ECD_00160at 184.794 kb on + strand, within ECD_00160at 184.961 kb on + strand, within ECD_00160at 184.961 kb on + strand, within ECD_00160at 185.135 kb on - strandat 185.150 kb on - strandat 185.193 kb on + strandat 185.194 kb on - strandat 185.194 kb on - strandat 185.223 kb on - strandat 185.260 kb on + strandat 185.261 kb on - strandat 185.265 kb on + strandat 185.266 kb on - strandat 185.266 kb on - strandat 185.269 kb on + strandat 185.282 kb on + strandat 185.305 kb on + strandat 185.305 kb on + strandat 185.306 kb on - strandat 185.306 kb on - strandat 185.306 kb on - strandat 185.306 kb on - strandat 185.356 kb on + strandat 185.356 kb on + strandat 185.356 kb on + strandat 185.356 kb on + strandat 185.356 kb on + strandat 185.357 kb on - strandat 185.388 kb on + strandat 185.388 kb on + strandat 185.388 kb on + strandat 185.389 kb on - strandat 185.410 kb on + strandat 185.411 kb on - strandat 185.539 kb on + strand, within ECD_00161at 185.577 kb on + strand, within ECD_00161at 185.577 kb on + strand, within ECD_00161at 185.611 kb on + strand, within ECD_00161at 185.611 kb on + strand, within ECD_00161at 185.612 kb on - strand, within ECD_00161at 185.752 kb on + strand, within ECD_00161at 186.063 kb on - strand, within ECD_00161

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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182,762 - ECD_00159 0.45 +1.2
182,766 - ECD_00159 0.45 -0.6
182,804 - ECD_00159 0.48 -0.9
182,894 - ECD_00159 0.54 +0.8
183,142 - ECD_00159 0.70 +0.2
183,320 - ECD_00159 0.82 +0.4
183,503 - -0.2
183,505 + +0.3
183,505 + +0.4
183,529 + +0.2
183,530 - +0.9
183,531 + +0.1
183,554 - +0.1
183,569 - -0.9
183,588 - -1.7
183,725 - +0.2
183,725 - +1.3
183,782 + +0.4
183,896 + ECD_00160 0.12 +6.0
183,896 + ECD_00160 0.12 -0.8
183,896 + ECD_00160 0.12 +0.7
183,896 + ECD_00160 0.12 +0.5
183,896 + ECD_00160 0.12 +0.1
183,896 + ECD_00160 0.12 +0.4
183,919 - ECD_00160 0.13 -2.1
184,099 + ECD_00160 0.26 +0.5
184,100 - ECD_00160 0.26 -1.1
184,100 - ECD_00160 0.26 -0.2
184,100 - ECD_00160 0.26 +0.9
184,100 - ECD_00160 0.26 +0.3
184,143 + ECD_00160 0.29 +1.3
184,254 + ECD_00160 0.37 +1.1
184,254 + ECD_00160 0.37 -0.1
184,291 + ECD_00160 0.40 +0.2
184,291 + ECD_00160 0.40 +0.4
184,292 - ECD_00160 0.40 +0.2
184,527 + ECD_00160 0.56 -0.8
184,673 + ECD_00160 0.66 -0.5
184,750 - ECD_00160 0.72 +1.4
184,794 + ECD_00160 0.75 +0.2
184,961 + ECD_00160 0.87 +1.1
184,961 + ECD_00160 0.87 -0.2
185,135 - +0.1
185,150 - +0.0
185,193 + +0.6
185,194 - +0.6
185,194 - -0.2
185,223 - +1.1
185,260 + +1.1
185,261 - -0.4
185,265 + -0.2
185,266 - +0.1
185,266 - +0.5
185,269 + +2.5
185,282 + -1.2
185,305 + -0.5
185,305 + -0.6
185,306 - +0.6
185,306 - +0.6
185,306 - +0.1
185,306 - +0.8
185,356 + +0.6
185,356 + -0.4
185,356 + -1.4
185,356 + -0.1
185,356 + +0.5
185,357 - -0.2
185,388 + +1.9
185,388 + -1.6
185,388 + -1.3
185,389 - +0.3
185,410 + -0.8
185,411 - +1.1
185,539 + ECD_00161 0.20 +0.4
185,577 + ECD_00161 0.23 -0.5
185,577 + ECD_00161 0.23 -0.2
185,611 + ECD_00161 0.26 -0.0
185,611 + ECD_00161 0.26 +0.2
185,612 - ECD_00161 0.26 +0.6
185,752 + ECD_00161 0.39 -0.8
186,063 - ECD_00161 0.65 +2.2

Or see this region's nucleotide sequence