Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00154 and ECD_00155 are separated by 81 nucleotides ECD_00155 and ECD_00156 are separated by 46 nucleotides ECD_00156 and ECD_00157 are separated by 37 nucleotides ECD_00157 and ECD_00158 overlap by 8 nucleotides
ECD_00154: ECD_00154 - H(+)/Cl(-) exchange transporter, at 177,950 to 179,371
_00154
ECD_00155: ECD_00155 - iron-sulfur cluster insertion protein, at 179,453 to 179,797
_00155
ECD_00156: ECD_00156 - UPF0126 family inner membrane protein, at 179,844 to 180,467
_00156
ECD_00157: ECD_00157 - vitamin B12 ABC transporter periplasmic binding protein, at 180,505 to 181,305
_00157
ECD_00158: ECD_00158 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 181,298 to 181,996
_00158
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.984 kb on - strand, within ECD_00154 at 179.120 kb on - strand, within ECD_00154 at 179.152 kb on + strand, within ECD_00154 at 179.153 kb on - strand, within ECD_00154 at 179.204 kb on + strand, within ECD_00154 at 179.205 kb on - strand, within ECD_00154 at 179.227 kb on + strand, within ECD_00154 at 179.228 kb on - strand, within ECD_00154 at 179.250 kb on + strand at 179.251 kb on - strand at 179.251 kb on - strand at 179.390 kb on - strand at 179.393 kb on + strand at 179.452 kb on + strand at 179.788 kb on + strand at 179.789 kb on - strand at 179.791 kb on + strand at 179.791 kb on + strand at 179.882 kb on + strand at 179.882 kb on + strand at 179.883 kb on - strand at 179.883 kb on - strand at 179.974 kb on + strand, within ECD_00156 at 180.006 kb on - strand, within ECD_00156 at 180.092 kb on + strand, within ECD_00156 at 180.104 kb on + strand, within ECD_00156 at 180.137 kb on + strand, within ECD_00156 at 180.301 kb on - strand, within ECD_00156 at 180.345 kb on + strand, within ECD_00156 at 180.445 kb on - strand at 180.511 kb on + strand at 180.512 kb on - strand at 180.512 kb on - strand at 180.529 kb on - strand at 180.552 kb on + strand at 180.555 kb on + strand at 180.556 kb on - strand at 180.556 kb on - strand at 180.692 kb on - strand, within ECD_00157 at 180.857 kb on + strand, within ECD_00157 at 180.950 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.299 kb on + strand at 181.299 kb on + strand at 181.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 178,983 + ECD_00154 0.73 -2.4 178,983 + ECD_00154 0.73 -0.5 178,983 + ECD_00154 0.73 -0.5 178,984 - ECD_00154 0.73 +0.6 179,120 - ECD_00154 0.82 -0.7 179,152 + ECD_00154 0.85 -0.5 179,153 - ECD_00154 0.85 +0.6 179,204 + ECD_00154 0.88 -0.0 179,205 - ECD_00154 0.88 +0.5 179,227 + ECD_00154 0.90 +0.4 179,228 - ECD_00154 0.90 -0.4 179,250 + -0.0 179,251 - -0.0 179,251 - +5.4 179,390 - +1.8 179,393 + -1.3 179,452 + +2.6 179,788 + +0.0 179,789 - +2.2 179,791 + -1.0 179,791 + -0.2 179,882 + +1.6 179,882 + +0.4 179,883 - +0.5 179,883 - +1.3 179,974 + ECD_00156 0.21 -1.4 180,006 - ECD_00156 0.26 -0.6 180,092 + ECD_00156 0.40 -0.5 180,104 + ECD_00156 0.42 -0.4 180,137 + ECD_00156 0.47 +0.5 180,301 - ECD_00156 0.73 -1.7 180,345 + ECD_00156 0.80 +0.5 180,445 - +0.2 180,511 + +1.2 180,512 - -1.4 180,512 - -0.6 180,529 - +0.3 180,552 + +0.7 180,555 + +0.2 180,556 - +1.4 180,556 - -1.5 180,692 - ECD_00157 0.23 +0.9 180,857 + ECD_00157 0.44 +1.6 180,950 - ECD_00157 0.56 -0.1 181,042 - ECD_00157 0.67 +1.6 181,042 - ECD_00157 0.67 -0.6 181,299 + +0.5 181,299 + -0.5 181,300 - +0.9
Or see this region's nucleotide sequence