Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00142 and ECD_00143 are separated by 92 nucleotides ECD_00143 and ECD_00144 are separated by 36 nucleotides ECD_00144 and ECD_00145 are separated by 177 nucleotides
ECD_00142: ECD_00142 - poly(A) polymerase, at 160,581 to 161,945
_00142
ECD_00143: ECD_00143 - glutamyl-Q tRNA(Asp) synthetase, at 162,038 to 162,964
_00143
ECD_00144: ECD_00144 - transcriptional regulator of rRNA transcription; DnaK suppressor protein, at 163,001 to 163,456
_00144
ECD_00145: ECD_00145 - sugar fermentation stimulation protein A, at 163,634 to 164,338
_00145
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.174 kb on - strand, within ECD_00142 at 161.190 kb on - strand, within ECD_00142 at 161.192 kb on - strand, within ECD_00142 at 161.355 kb on - strand, within ECD_00142 at 161.474 kb on - strand, within ECD_00142 at 161.474 kb on - strand, within ECD_00142 at 161.592 kb on - strand, within ECD_00142 at 161.688 kb on - strand, within ECD_00142 at 161.731 kb on - strand, within ECD_00142 at 161.761 kb on - strand, within ECD_00142 at 161.822 kb on - strand at 161.822 kb on - strand at 161.865 kb on - strand at 161.865 kb on - strand at 162.292 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.421 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.592 kb on - strand, within ECD_00143 at 162.637 kb on - strand, within ECD_00143 at 162.640 kb on - strand, within ECD_00143 at 162.644 kb on + strand, within ECD_00143 at 162.645 kb on - strand, within ECD_00143 at 162.757 kb on + strand, within ECD_00143 at 162.804 kb on - strand, within ECD_00143 at 162.805 kb on + strand, within ECD_00143 at 162.805 kb on + strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.806 kb on - strand, within ECD_00143 at 162.810 kb on - strand, within ECD_00143 at 162.846 kb on + strand, within ECD_00143 at 162.847 kb on - strand, within ECD_00143 at 162.847 kb on - strand, within ECD_00143 at 162.916 kb on + strand at 162.916 kb on + strand at 162.917 kb on - strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.918 kb on + strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.919 kb on - strand at 162.999 kb on - strand at 163.518 kb on - strand at 163.518 kb on - strand at 163.522 kb on - strand at 163.548 kb on - strand at 163.551 kb on + strand at 163.611 kb on - strand at 163.628 kb on - strand at 163.628 kb on - strand at 163.628 kb on - strand at 163.628 kb on - strand at 163.635 kb on + strand at 163.636 kb on - strand at 163.642 kb on + strand at 163.737 kb on - strand, within ECD_00145 at 163.737 kb on - strand, within ECD_00145 at 163.784 kb on - strand, within ECD_00145 at 163.939 kb on + strand, within ECD_00145 at 163.941 kb on + strand, within ECD_00145 at 163.941 kb on + strand, within ECD_00145 at 163.941 kb on + strand, within ECD_00145 at 163.942 kb on - strand, within ECD_00145 at 163.942 kb on - strand, within ECD_00145 at 163.942 kb on - strand, within ECD_00145
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 161,174 - ECD_00142 0.43 -2.4 161,190 - ECD_00142 0.45 -0.9 161,192 - ECD_00142 0.45 -2.1 161,355 - ECD_00142 0.57 -1.2 161,474 - ECD_00142 0.65 -1.8 161,474 - ECD_00142 0.65 -1.8 161,592 - ECD_00142 0.74 -0.5 161,688 - ECD_00142 0.81 -1.4 161,731 - ECD_00142 0.84 -0.8 161,761 - ECD_00142 0.86 -0.5 161,822 - -1.1 161,822 - +0.1 161,865 - -0.8 161,865 - -0.6 162,292 - ECD_00143 0.27 -2.1 162,421 - ECD_00143 0.41 -0.8 162,421 - ECD_00143 0.41 -0.3 162,421 - ECD_00143 0.41 -0.6 162,592 - ECD_00143 0.60 -1.1 162,592 - ECD_00143 0.60 +0.1 162,592 - ECD_00143 0.60 +0.3 162,637 - ECD_00143 0.65 -0.9 162,640 - ECD_00143 0.65 -0.7 162,644 + ECD_00143 0.65 +0.2 162,645 - ECD_00143 0.65 -1.9 162,757 + ECD_00143 0.78 -0.9 162,804 - ECD_00143 0.83 -0.4 162,805 + ECD_00143 0.83 -1.4 162,805 + ECD_00143 0.83 -1.1 162,806 - ECD_00143 0.83 -0.9 162,806 - ECD_00143 0.83 +0.2 162,806 - ECD_00143 0.83 -0.5 162,810 - ECD_00143 0.83 -0.0 162,846 + ECD_00143 0.87 -2.2 162,847 - ECD_00143 0.87 +0.3 162,847 - ECD_00143 0.87 +0.4 162,916 + -0.5 162,916 + -0.7 162,917 - -0.0 162,918 + -0.3 162,918 + -1.4 162,918 + +0.4 162,918 + -0.7 162,918 + -0.6 162,919 - +1.9 162,919 - +0.7 162,919 - +0.5 162,919 - +0.2 162,919 - +0.5 162,919 - +0.6 162,919 - -0.9 162,919 - +0.8 162,999 - -0.0 163,518 - -0.4 163,518 - -0.2 163,522 - +0.3 163,548 - -1.0 163,551 + +1.1 163,611 - -0.7 163,628 - -0.1 163,628 - -0.3 163,628 - +0.8 163,628 - -1.2 163,635 + -0.4 163,636 - +0.2 163,642 + +0.0 163,737 - ECD_00145 0.15 +1.4 163,737 - ECD_00145 0.15 -0.6 163,784 - ECD_00145 0.21 +0.1 163,939 + ECD_00145 0.43 +0.8 163,941 + ECD_00145 0.44 +0.8 163,941 + ECD_00145 0.44 +0.9 163,941 + ECD_00145 0.44 -0.1 163,942 - ECD_00145 0.44 -0.5 163,942 - ECD_00145 0.44 -0.1 163,942 - ECD_00145 0.44 +0.4
Or see this region's nucleotide sequence