Strain Fitness in Escherichia coli BL21 around ECD_00138

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00136 and ECD_00137 are separated by 14 nucleotidesECD_00137 and ECD_00138 are separated by 16 nucleotidesECD_00138 and ECD_00139 are separated by 34 nucleotidesECD_00139 and ECD_00140 are separated by 104 nucleotides ECD_00136: ECD_00136 - putative fimbrial-like adhesin protein, at 154,468 to 155,070 _00136 ECD_00137: ECD_00137 - putative fimbrial-like adhesin protein, at 155,085 to 155,654 _00137 ECD_00138: ECD_00138 - putative outer membrane usher protein, at 155,671 to 158,271 _00138 ECD_00139: ECD_00139 - putative periplasmic pilin chaperone, at 158,306 to 159,046 _00139 ECD_00140: ECD_00140 - putative fimbrial-like adhesin protein, at 159,151 to 159,735 _00140 Position (kb) 155 156 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 154.935 kb on + strand, within ECD_00136at 155.241 kb on - strand, within ECD_00137at 155.326 kb on - strand, within ECD_00137at 155.326 kb on - strand, within ECD_00137at 155.326 kb on - strand, within ECD_00137at 155.331 kb on - strand, within ECD_00137at 155.331 kb on - strand, within ECD_00137at 155.336 kb on + strand, within ECD_00137at 156.115 kb on - strand, within ECD_00138at 156.126 kb on - strand, within ECD_00138at 156.227 kb on - strand, within ECD_00138at 156.227 kb on - strand, within ECD_00138at 156.318 kb on - strand, within ECD_00138at 156.339 kb on - strand, within ECD_00138at 156.339 kb on - strand, within ECD_00138at 156.370 kb on - strand, within ECD_00138at 156.389 kb on + strand, within ECD_00138at 156.389 kb on + strand, within ECD_00138at 156.413 kb on + strand, within ECD_00138at 156.424 kb on - strand, within ECD_00138at 156.442 kb on - strand, within ECD_00138at 156.442 kb on - strand, within ECD_00138at 156.477 kb on + strand, within ECD_00138at 156.515 kb on - strand, within ECD_00138at 156.602 kb on + strand, within ECD_00138at 156.642 kb on - strand, within ECD_00138at 156.642 kb on - strand, within ECD_00138at 157.109 kb on + strand, within ECD_00138at 157.113 kb on - strand, within ECD_00138at 157.113 kb on - strand, within ECD_00138at 157.113 kb on - strand, within ECD_00138at 157.272 kb on + strand, within ECD_00138at 157.509 kb on + strand, within ECD_00138at 157.510 kb on - strand, within ECD_00138at 157.511 kb on + strand, within ECD_00138at 157.512 kb on - strand, within ECD_00138at 157.562 kb on - strand, within ECD_00138at 157.562 kb on - strand, within ECD_00138at 157.575 kb on + strand, within ECD_00138at 157.614 kb on - strand, within ECD_00138at 157.728 kb on - strand, within ECD_00138at 158.046 kb on + strandat 158.078 kb on + strandat 158.166 kb on - strandat 158.242 kb on - strandat 158.485 kb on + strand, within ECD_00139at 158.496 kb on + strand, within ECD_00139at 158.497 kb on - strand, within ECD_00139at 158.499 kb on + strand, within ECD_00139at 158.623 kb on + strand, within ECD_00139at 158.828 kb on - strand, within ECD_00139

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
154,935 + ECD_00136 0.77 +0.7
155,241 - ECD_00137 0.27 +0.6
155,326 - ECD_00137 0.42 -0.6
155,326 - ECD_00137 0.42 +0.2
155,326 - ECD_00137 0.42 +0.5
155,331 - ECD_00137 0.43 +0.8
155,331 - ECD_00137 0.43 +0.0
155,336 + ECD_00137 0.44 -0.5
156,115 - ECD_00138 0.17 +0.8
156,126 - ECD_00138 0.17 +1.1
156,227 - ECD_00138 0.21 +0.5
156,227 - ECD_00138 0.21 +0.3
156,318 - ECD_00138 0.25 -0.3
156,339 - ECD_00138 0.26 -1.0
156,339 - ECD_00138 0.26 -0.9
156,370 - ECD_00138 0.27 +0.1
156,389 + ECD_00138 0.28 +0.1
156,389 + ECD_00138 0.28 +0.6
156,413 + ECD_00138 0.29 -0.4
156,424 - ECD_00138 0.29 +1.4
156,442 - ECD_00138 0.30 +0.4
156,442 - ECD_00138 0.30 -0.2
156,477 + ECD_00138 0.31 +0.6
156,515 - ECD_00138 0.32 +1.5
156,602 + ECD_00138 0.36 -2.2
156,642 - ECD_00138 0.37 +0.9
156,642 - ECD_00138 0.37 +0.4
157,109 + ECD_00138 0.55 -1.3
157,113 - ECD_00138 0.55 -0.7
157,113 - ECD_00138 0.55 +1.4
157,113 - ECD_00138 0.55 +4.8
157,272 + ECD_00138 0.62 +1.7
157,509 + ECD_00138 0.71 -0.5
157,510 - ECD_00138 0.71 -0.5
157,511 + ECD_00138 0.71 +4.8
157,512 - ECD_00138 0.71 +1.6
157,562 - ECD_00138 0.73 +0.0
157,562 - ECD_00138 0.73 +0.4
157,575 + ECD_00138 0.73 -0.0
157,614 - ECD_00138 0.75 -1.0
157,728 - ECD_00138 0.79 +0.8
158,046 + +1.3
158,078 + +1.2
158,166 - +0.6
158,242 - -0.2
158,485 + ECD_00139 0.24 +1.6
158,496 + ECD_00139 0.26 -1.7
158,497 - ECD_00139 0.26 +0.0
158,499 + ECD_00139 0.26 -0.4
158,623 + ECD_00139 0.43 -1.0
158,828 - ECD_00139 0.70 +0.1

Or see this region's nucleotide sequence