Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00117 and ECD_00118 are separated by 174 nucleotides ECD_00118 and ECD_00119 are separated by 37 nucleotides ECD_00119 and ECD_00120 are separated by 15 nucleotides
ECD_00117: ECD_00117 - aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase, at 134,420 to 137,017
_00117
ECD_00118: ECD_00118 - UPF0231 family protein, at 137,192 to 137,554
_00118
ECD_00119: ECD_00119 - S-adenosylmethionine decarboxylase, at 137,592 to 138,386
_00119
ECD_00120: ECD_00120 - spermidine synthase (putrescine aminopropyltransferase), at 138,402 to 139,268
_00120
Position (kb) 137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.450 kb on + strand, within ECD_00117 at 136.681 kb on + strand, within ECD_00117 at 137.137 kb on + strand at 137.137 kb on + strand at 137.137 kb on + strand at 137.192 kb on - strand at 137.275 kb on + strand, within ECD_00118 at 137.378 kb on + strand, within ECD_00118 at 137.378 kb on + strand, within ECD_00118 at 137.378 kb on + strand, within ECD_00118 at 137.378 kb on + strand, within ECD_00118 at 137.378 kb on + strand, within ECD_00118 at 137.379 kb on - strand, within ECD_00118 at 137.465 kb on + strand, within ECD_00118 at 137.465 kb on + strand, within ECD_00118 at 137.466 kb on - strand, within ECD_00118 at 137.469 kb on - strand, within ECD_00118 at 137.606 kb on + strand at 137.607 kb on - strand at 137.620 kb on + strand at 137.621 kb on - strand at 137.707 kb on + strand, within ECD_00119 at 137.788 kb on + strand, within ECD_00119 at 137.788 kb on + strand, within ECD_00119 at 137.789 kb on - strand, within ECD_00119 at 137.789 kb on - strand, within ECD_00119 at 137.813 kb on + strand, within ECD_00119 at 137.831 kb on + strand, within ECD_00119 at 137.858 kb on + strand, within ECD_00119 at 138.000 kb on - strand, within ECD_00119 at 138.004 kb on - strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.035 kb on + strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.036 kb on - strand, within ECD_00119 at 138.039 kb on + strand, within ECD_00119 at 138.040 kb on - strand, within ECD_00119 at 138.047 kb on + strand, within ECD_00119 at 138.195 kb on - strand, within ECD_00119 at 138.201 kb on - strand, within ECD_00119 at 138.201 kb on - strand, within ECD_00119 at 138.203 kb on + strand, within ECD_00119 at 138.258 kb on - strand, within ECD_00119 at 138.272 kb on + strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.275 kb on - strand, within ECD_00119 at 138.281 kb on + strand, within ECD_00119 at 138.325 kb on + strand at 138.326 kb on - strand at 138.330 kb on - strand at 138.436 kb on + strand at 138.437 kb on - strand at 138.445 kb on - strand at 138.478 kb on + strand at 138.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 136,450 + ECD_00117 0.78 +1.6 136,681 + ECD_00117 0.87 +0.3 137,137 + +1.1 137,137 + +1.2 137,137 + -0.1 137,192 - +0.1 137,275 + ECD_00118 0.23 -0.7 137,378 + ECD_00118 0.51 -1.1 137,378 + ECD_00118 0.51 -0.4 137,378 + ECD_00118 0.51 -1.5 137,378 + ECD_00118 0.51 -1.9 137,378 + ECD_00118 0.51 +0.2 137,379 - ECD_00118 0.52 +0.7 137,465 + ECD_00118 0.75 -0.6 137,465 + ECD_00118 0.75 -1.8 137,466 - ECD_00118 0.75 -0.7 137,469 - ECD_00118 0.76 -0.4 137,606 + +0.4 137,607 - -0.2 137,620 + -0.2 137,621 - +0.6 137,707 + ECD_00119 0.14 +1.0 137,788 + ECD_00119 0.25 +0.3 137,788 + ECD_00119 0.25 -1.4 137,789 - ECD_00119 0.25 -0.1 137,789 - ECD_00119 0.25 -1.7 137,813 + ECD_00119 0.28 -0.4 137,831 + ECD_00119 0.30 -0.5 137,858 + ECD_00119 0.33 +0.1 138,000 - ECD_00119 0.51 -0.5 138,004 - ECD_00119 0.52 -1.1 138,035 + ECD_00119 0.56 +0.4 138,035 + ECD_00119 0.56 -0.9 138,035 + ECD_00119 0.56 -0.4 138,035 + ECD_00119 0.56 -0.1 138,036 - ECD_00119 0.56 +0.1 138,036 - ECD_00119 0.56 +0.1 138,036 - ECD_00119 0.56 +0.1 138,036 - ECD_00119 0.56 +0.1 138,036 - ECD_00119 0.56 +0.8 138,036 - ECD_00119 0.56 -2.0 138,036 - ECD_00119 0.56 -0.7 138,039 + ECD_00119 0.56 -0.1 138,040 - ECD_00119 0.56 +2.0 138,047 + ECD_00119 0.57 +0.6 138,195 - ECD_00119 0.76 -0.3 138,201 - ECD_00119 0.77 +1.1 138,201 - ECD_00119 0.77 -0.1 138,203 + ECD_00119 0.77 +0.7 138,258 - ECD_00119 0.84 -0.1 138,272 + ECD_00119 0.86 -0.6 138,275 - ECD_00119 0.86 -0.4 138,275 - ECD_00119 0.86 +0.3 138,275 - ECD_00119 0.86 -1.1 138,281 + ECD_00119 0.87 -1.7 138,325 + +0.3 138,326 - +1.6 138,330 - +0.3 138,436 + +1.9 138,437 - +0.3 138,445 - -1.3 138,478 + +1.1 138,479 - +0.6
Or see this region's nucleotide sequence